Hg_chrom2_TN10mRNA_4084
Organism: Heterodera glycines Gene Locus: chr2:9556477-9560978 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.937 | 1.151 | 0.843 | 1.079 | 1.217 | 0.788 | 0.791 | 1.183 | 1.381 | 0.916 | 1.354 | 1.479 | 0.775 | 1.292 | 1.048 | 0.637 | 1.046 | 0.885 | 0.508 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3872
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RKSK,KPVKRTKAQKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.150
|
0.030
|
0.576
|
0.222
|
0.228
|
0.127
|
0.116
|
0.113
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001870
|
3.000
|
1.000
|
Hsc_gene_4529.t1
|
Hsc_gene_4529.t1
|
— |
Q91YR5.1 eEF1A lysine and N-terminal methyltransferase [Mus musculus]
|
KAF7638540.1 Methyltransf_11 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.852|GO:0110165_0.852|GO:0005622_0.761|GO:0005737_0.702|GO:0003674_0.609|GO:0016020_0.554|GO:0008150_0.530
|
IPR025714+48-170+|IPR029063+9-221_12-172_388-664_462-631+|IPR051419+5-228+
|
— |
PF01564+489-610+Spermine/spermidine_synthase_domain|PF13847+48-170+Methyltransferase_domain
|
— |
PTHR12176+5-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
77873.240
|
6.844
|
2.500
|
26.763
|
9.784
|
46.763
|
53.237
|
13.957
|
12.806
|
48.777
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
405.064
|
903.711
|
533.849
|
622.739
|
540.377
|
460.833
|
497.853
|
598.834
|
100.865
|
137.182
|
121.618
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.989
|
-0.674
|
0.331
|
-0.236
|
-0.215
|
— |
0.272
|
— | — | — | — | — | — |
No JSON data available for plots.