Hg_chrom2_TN10mRNA_4085
Organism: Heterodera glycines Gene Locus: chr2:9561401-9562993 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.356 | 1.233 | 1.285 | 0.122 | 1.767 | 0.906 | 0.547 | 1.237 | 0.942 | 1.051 | 0.857 | 0.831 | 1.08 | 0.476 | 1.659 | 0.656 | 0.811 | 1.124 | 0.544 | 0.935 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3873
|
— | — |
1.333
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.777
|
0.087
|
0.004
|
0.525
|
0.061
|
0.084
|
0.076
|
0.002
|
0.057
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000388
|
6.000
|
2.000
|
Hsc_gene_4528.t1;Hsc_gene_8874.t1
|
— | — |
P25161.1 Probable 26S proteasome non-ATPase regulatory subunit 3 [Drosophila melanogaster]
|
KAF7637239.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000502|GO:0030234|GO:0042176
|
GO:0005575_0.790|GO:0110165_0.777|GO:0005622_0.728|GO:0008150_0.668|GO:0032991_0.579|GO:0016020_0.565|GO:0043226_0.533|GO:0043229_0.531|GO:0005737_0.504
|
IPR000717+129-196_140-235+|IPR013586+218-281+|IPR050756+107-274+
|
SM00088+140-235+
|
PF01399+129-196+PCI_domain|PF08375+218-281+Proteasome_regulatory_subunit_C-terminal
|
— |
PTHR10758+107-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15;251-283
|
1.000
|
16-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
32120.850
|
5.064
|
-7.500
|
33.922
|
10.247
|
52.297
|
47.703
|
16.254
|
17.668
|
48.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
339.236
|
912.385
|
358.092
|
336.525
|
302.029
|
215.356
|
292.488
|
455.258
|
199.790
|
257.267
|
232.634
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.578
|
-1.576
|
— |
-0.189
|
-0.472
|
0.452
|
0.977
|
-0.496
|
— | — | — | — | — |
No JSON data available for plots.