Hg_chrom2_TN10mRNA_4087
Organism: Heterodera glycines Gene Locus: chr2:9567394-9572498 Feature type: polypeptideProtein Sequence
Length: 165
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.987 | 0.11 | 2.508 | 0.101 | 0.466 | 0.505 | 0.303 | 0.943 | 2.048 | 0.367 | 1.07 | 1.347 | 1.282 | 1.237 | 2.078 | 0.795 | 0.643 | 3.73 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3875
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
32-52
|
0.990
|
12-41
|
0.989
|
— | — |
0.000
|
— | — |
0.135
|
0.411
|
0.020
|
0.256
|
0.861
|
0.291
|
0.728
|
0.068
|
0.139
|
0.242
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003425
|
2.000
|
1.000
|
Hsc_gene_4536.t1
|
— | — |
Q7SXS2.1 Protein YIPF5 [Xenopus laevis]
|
KAF7637233.1 Protein YIPF [Meloidogyne graminicola]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.931|GO:0110165_0.930|GO:0009987_0.891|GO:0016020_0.885|GO:0071944_0.831|GO:0005886_0.819|GO:0005622_0.792|GO:0043226_0.778|GO:0043227_0.775|GO:0005737_0.745|GO:0043229_0.744|GO:0043231_0.744|GO:0005773_0.723|GO:0012505_0.709|GO:0051179_0.621|GO:0006810_0.613|GO:0051234_0.613|GO:0065007_0.582|GO:0050789_0.568|GO:0050794_0.548|GO:0016043_0.541|GO:0071840_0.541|GO:0051641_0.532|GO:0051649_0.518|GO:0006996_0.511|GO:0016192_0.511|GO:0046907_0.505|GO:0010256_0.502
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
18192.520
|
9.327
|
12.500
|
10.303
|
12.121
|
35.758
|
64.242
|
9.091
|
1.212
|
55.758
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
1.241
|
0.000
|
0.143
|
0.000
|
0.000
|
0.257
|
0.101
|
0.000
|
2.570
|
3.312
|
2.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.