Hg_chrom2_TN10mRNA_4091
Organism: Heterodera glycines Gene Locus: chr2:9577626-9580341 Feature type: polypeptideProtein Sequence
Length: 418
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.168 | 0.826 | 0.742 | 1.356 | 1.35 | 0.484 | 1.435 | 0.904 | 1.552 | 0.544 | 1.548 | 1.528 | 0.828 | 1.074 | 1.23 | 0.824 | 0.942 | 0.736 | 0.563 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3878
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.324
|
0.009
|
0.535
|
0.416
|
0.259
|
0.469
|
0.071
|
0.147
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001871
|
3.000
|
1.000
|
Hsc_gene_4540.t1
|
Hsc_gene_4540.t1
|
— |
Q93571.2 Ubiquitin-conjugating enzyme E2 25 [Caenorhabditis elegans]
|
KAF7637212.1 UBIQUITIN_CONJUGAT_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.772|GO:0005575_0.705|GO:0110165_0.703|GO:0003674_0.666|GO:0005622_0.616|GO:0016020_0.522|GO:0003824_0.507
|
IPR000608+193-359_198-339+|IPR016135+189-358_193-352+|IPR050113+193-338+
|
SM00212+196-359+
|
PF00179+198-339+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+193-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
108-200
|
2.000
|
1-107;201-418
|
2qgx_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.581
|
47017.370
|
5.079
|
-10.000
|
24.402
|
11.244
|
48.325
|
51.675
|
11.722
|
12.679
|
48.325
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
167.265
|
80.977
|
87.298
|
79.846
|
105.873
|
136.926
|
446.492
|
419.026
|
68.200
|
171.970
|
127.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.374
|
0.387
|
1.716
|
1.506
|
— | — | — | — | — | — |
No JSON data available for plots.