Hg_chrom2_TN10mRNA_4095
Organism: Heterodera glycines Gene Locus: chr2:9590793-9591734 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 1.064 | 1.307 | 0.902 | 1.307 | 1.173 | 0.778 | 0.98 | 1.017 | 1.413 | 0.99 | 1.538 | 0.908 | 0.628 | 1.867 | 0.747 | 0.214 | 1.684 | 0.503 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3882
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKLLNLRLFEHPEKQKRW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.449
|
0.018
|
0.713
|
0.199
|
0.232
|
0.137
|
0.066
|
0.119
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003426
|
2.000
|
1.000
|
Hsc_gene_4541.t1
|
Hsc_gene_4541.t1;Hsc_gene_4541.t2
|
— |
Q9VGP0.2 D-aminoacyl-tRNA deacylase [Drosophila melanogaster]
|
KAI1728119.1 d-Tyr-tRNA(Tyr) deacylase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002161|GO:0005737|GO:0051499
|
GO:0008150_0.849|GO:0003674_0.761|GO:0065007_0.660|GO:0008152_0.610|GO:0044238_0.591|GO:0043170_0.586|GO:0006139_0.547|GO:0005575_0.542|GO:0110165_0.542|GO:0003824_0.541|GO:0090304_0.536|GO:0016070_0.527|GO:0065008_0.515|GO:0016787_0.502
|
IPR003732+1-148_1-149_2-147+|IPR023509+1-148_1-150+
|
— |
PF02580+2-147+D-Tyr-tRNA(Tyr)_deacylase
|
G3DSA:3.50.80.10:FF:000001+1-152+D-aminoacyl-tRNA_deacylase
|
PTHR10472+1-148+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-153
|
1.000
|
1-143
|
2okv_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
17498.170
|
7.701
|
2.500
|
32.680
|
7.843
|
48.366
|
51.634
|
17.647
|
15.033
|
46.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellowgreen
|
81.200
|
45.662
|
35.289
|
25.869
|
27.369
|
14.963
|
89.741
|
81.737
|
122.073
|
143.459
|
134.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.602
|
-0.957
|
— | — |
-0.857
|
2.594
|
2.340
|
— | — | — | — | — | — |
No JSON data available for plots.