SCN Proteipedia

Hg_chrom2_TN10mRNA_4096

Organism: Heterodera glycines Gene Locus: chr2:9591678-9593508 Feature type: polypeptide

Protein Sequence

Length: 277

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.469	1.259	0.853	0.871	1.324	0.463	0.688	0.722	0.802	1.171	0.82	1.274	0.802	0.694	2.063	1.135	1.302	0.82	0.0	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3883	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.867	0.191	0.010	0.377	0.013	0.012	0.029	0.031	0.047	0.036

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003427	2.000	1.000	Hsc_gene_4542.t1	Hsc_gene_4542.t1	—	B4MVH6.1 SAGA-associated factor 11 homolog 1 [Drosophila willistoni]	KAF7637230.1 D-aminoacyl-tRNA deacylase, partial [Meloidogyne graminicola]	No	-0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.920\|GO:0005575_0.906\|GO:0110165_0.895\|GO:0009987_0.874\|GO:0065007_0.831\|GO:0050789_0.827\|GO:0005622_0.824\|GO:0050794_0.808\|GO:0016020_0.803\|GO:0008152_0.789\|GO:0043226_0.777\|GO:0043170_0.776\|GO:0044238_0.775\|GO:0009058_0.772\|GO:0044237_0.771\|GO:0043229_0.763\|GO:0009059_0.760\|GO:0044249_0.760\|GO:0010467_0.757\|GO:0006139_0.752\|GO:0019222_0.746\|GO:0031323_0.744\|GO:0080090_0.743\|GO:0034654_0.741\|GO:0048518_0.741\|GO:0060255_0.736\|GO:0090304_0.736\|GO:0141187_0.732\|GO:0016070_0.730\|GO:0032774_0.730\|GO:0009889_0.729\|GO:0010556_0.729\|GO:0031326_0.729\|GO:0048522_0.728\|GO:0010468_0.722\|GO:0043227_0.716\|GO:0019219_0.714\|GO:0051252_0.710\|GO:0006351_0.709\|GO:0009893_0.709\|GO:0006355_0.706\|GO:2001141_0.706\|GO:0043231_0.704\|GO:0010604_0.703\|GO:0031325_0.703\|GO:0009891_0.702\|GO:0031328_0.702\|GO:0010557_0.696\|GO:0045935_0.692\|GO:0051254_0.691\|GO:0045893_0.687\|GO:1902680_0.687\|GO:0005634_0.662\|GO:0043228_0.657\|GO:0043232_0.648\|GO:0032991_0.628\|GO:0005694_0.560\|GO:0140513_0.558\|GO:1902494_0.556\|GO:0000785_0.555\|GO:0140535_0.550\|GO:1990234_0.546\|GO:0000123_0.540\|GO:0000124_0.540\|GO:0031248_0.540\|GO:0070461_0.540\|GO:0071819_0.540\|GO:1902493_0.540\|GO:1905368_0.540\|GO:0003674_0.520	IPR013246+112-139+	—	PF08209+112-139+Sgf11_(transcriptional_regulation_protein)	—	PTHR47674+19-173+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-15;54-101;237-277	2.000	16-53;102-236	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.859	30084.080	9.469	10.000	29.603	4.332	52.708	47.292	16.968	12.635	55.957

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	blue	92.018	15.785	10.936	11.794	13.551	12.278	91.615	66.953	32.683	294.477	182.279

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.759	—	—	—	—	2.912	2.340	0.598	-3.276	—	-4.083	—	—

No JSON data available for plots.

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