Hg_chrom2_TN10mRNA_4099
Organism: Heterodera glycines Gene Locus: chr2:9612550-9613892 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 0.452 | 0.53 | 0.335 | 0.647 | 0.498 | 1.849 | 0.971 | 1.294 | 1.05 | 1.618 | 1.142 | 0.539 | 0.187 | 2.774 | 0.416 | 0.955 | 1.324 | 0.0 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3886
|
— | — |
1.667
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.679
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKTVTAMDVVYALKRQGR,RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKR
|
33-53
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.787
|
0.093
|
0.225
|
0.301
|
0.112
|
0.048
|
0.133
|
0.002
|
0.266
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000169
|
9.000
|
3.000
|
Hsc_gene_4515.t1;Hsc_gene_8785.t1;Hsc_gene_8844.t1
|
Hsc_gene_4515.t1;Hsc_gene_8783.t1;Hsc_gene_8785.t1;Hsc_gene_8799.t1;Hsc_gene_8844.t1
|
B0035.9;C50F4.7;F07B7.9;F17E9.12;F22B3.1;F45F2.3;F54E12.3;F55G1.11;K03A1.6;K06C4.10;K06C4.2;T10C6.14;T23D8.5;ZK131.1;ZK131.4;ZK131.8
|
P62776.2 Histone H4 [Holothuria tubulosa]
|
EJW77609.1 histone H4 [Wuchereria bancrofti]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.840|GO:0110165_0.836|GO:0005622_0.704|GO:0043226_0.702|GO:0016020_0.687|GO:0043229_0.674|GO:0043227_0.620|GO:0043231_0.620|GO:0005634_0.501
|
IPR001951+5-16_16-90_18-101_20-39_40-60_62-76_77-89_89-100+|IPR009072+2-103_3-102+|IPR019809+15-19+|IPR035425+34-96+
|
SM00417+16-90+
|
PF15511+34-96+Centromere_kinetochore_component_CENP-T_histone_fold
|
G3DSA:1.10.20.10:FF:000002+2-103+Histone_H4
|
PTHR10484+1-102+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-103
|
8tb9_X
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.952
|
11399.400
|
11.763
|
19.000
|
33.010
|
7.767
|
45.631
|
54.369
|
26.214
|
6.796
|
46.602
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
1029.130
|
163.511
|
40.756
|
56.769
|
59.349
|
87.418
|
129.323
|
383.429
|
316.876
|
3919.580
|
2375.564
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.233
|
-1.663
|
0.586
|
— |
0.573
|
0.576
|
2.022
|
-1.422
|
-3.737
|
— |
-5.843
|
— | — |
No JSON data available for plots.