Hg_chrom2_TN10mRNA_4100
Organism: Heterodera glycines Gene Locus: chr2:9614125-9615286 Feature type: polypeptideProtein Sequence
Length: 123
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.229 | 0.567 | 0.443 | 0.0 | 0.813 | 0.417 | 0.581 | 1.22 | 1.265 | 0.549 | 2.094 | 1.435 | 0.452 | 0.782 | 1.659 | 1.742 | 1.066 | 1.232 | 0.0 | 1.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3887
|
— | — |
1.667
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKPS,KPSGKGAKKAVKSTKAVRTGDKKRRKARK
|
25-64
|
0.857
|
— | — | — | — |
0.000
|
— | — |
0.808
|
0.263
|
0.049
|
0.412
|
0.072
|
0.061
|
0.146
|
0.002
|
0.158
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000150
|
8.000
|
5.000
|
Hsc_gene_22290.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
Hsc_gene_4516.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
F07B7.11;F07B7.4;F08G2.1;F17E9.9;F35H10.11;F45F2.12;F45F2.2;K06C4.12;K06C4.4;T10C6.11;ZK131.5;ZK131.9
|
Q27876.3 Probable histone H2B 4 [Caenorhabditis elegans]
|
KAI3409880.1 putative histone H2B 4 [Globodera pallida];KAI3411052.1 putative histone H2B 4 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.928|GO:0110165_0.925|GO:0005622_0.887|GO:0043226_0.872|GO:0043229_0.864|GO:0016020_0.783|GO:0043227_0.739|GO:0043231_0.725|GO:0005634_0.594|GO:0031974_0.517|GO:0043233_0.517|GO:0070013_0.517|GO:0031981_0.508
|
IPR000558+2-123_25-121_35-53_54-74_76-93_90-112_93-106_106-119+|IPR007125+7-98+|IPR009072+2-123_7-123+
|
SM00427+25-121+
|
PF00125+7-98+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000016+2-123+Histone_H2B
|
PTHR23428+2-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;115-123
|
1.000
|
28-114
|
3c9k_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
13608.790
|
11.173
|
19.500
|
31.707
|
8.130
|
54.472
|
45.528
|
24.390
|
7.317
|
51.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
670.169
|
1220.887
|
224.245
|
170.966
|
202.044
|
297.598
|
344.237
|
603.954
|
139.386
|
1678.476
|
1018.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.676
|
-2.973
|
-0.281
|
— |
0.574
|
0.219
|
0.911
|
-0.668
|
-3.691
|
— |
-2.954
|
— | — |
No JSON data available for plots.