Hg_chrom2_TN10mRNA_4101
Organism: Heterodera glycines Gene Locus: chr2:9616802-9619985 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.168 | 0.827 | 1.217 | 0.433 | 1.081 | 0.805 | 0.722 | 1.883 | 0.79 | 1.583 | 0.539 | 3.077 | 1.278 | 0.443 | 2.007 | 0.598 | 0.755 | 0.729 | 1.126 | 0.923 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3888
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
3-26
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.421
|
0.525
|
0.080
|
0.525
|
0.201
|
0.040
|
0.102
|
0.021
|
0.040
|
0.258
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003428
|
1.000
|
2.000
|
Hsc_gene_4545.t1;Hsc_gene_4561.t1
|
Hsc_gene_4544.t1
|
— |
Q3U186.1 Probable arginine--tRNA ligase, mitochondrial [Mus musculus]
|
KAF7638546.1 DALR_1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0006418|GO:0006420
|
GO:0005575_0.833|GO:0110165_0.796|GO:0005622_0.737|GO:0005737_0.693|GO:0016020_0.658|GO:0008150_0.649|GO:0043226_0.607|GO:0043229_0.581|GO:0043227_0.570|GO:0009987_0.556|GO:0043231_0.555|GO:0008152_0.504
|
IPR001278+5-20_20-36_44-57_227-248_284-478+|IPR001412+13-24+|IPR008909+359-478_361-478+|IPR009080+359-478+|IPR014729+10-346+|IPR035684+11-290+
|
SM00836+361-478+
|
PF00750+11-290+tRNA_synthetases_class_I_(R)|PF05746+359-478+DALR_anticodon_binding_domain
|
G3DSA:1.10.730.10:FF:000006+349-478+Arginyl-tRNA_synthetase_2,_mitochondrial
|
PTHR11956+284-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
55082.270
|
7.825
|
10.000
|
30.335
|
12.971
|
45.816
|
54.184
|
17.155
|
13.180
|
43.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2683.242
|
6540.865
|
3283.273
|
3463.076
|
3175.200
|
2477.652
|
2760.005
|
2531.985
|
1297.906
|
1678.733
|
1515.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.224
|
-1.054
|
0.186
|
-0.157
|
-0.343
|
0.166
|
— |
0.267
|
— | — | — | — | — |
No JSON data available for plots.