Hg_chrom2_TN10mRNA_4102
Organism: Heterodera glycines Gene Locus: chr2:9620255-9620982 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.718 | 1.01 | 1.703 | 1.132 | 1.266 | 1.176 | 1.235 | 0.96 | 0.501 | 1.216 | 0.363 | 1.715 | 0.831 | 0.882 | 1.058 | 0.708 | 0.935 | 0.95 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3889
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.647
|
0.084
|
0.594
|
0.132
|
0.137
|
0.029
|
0.170
|
0.133
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007229
|
1.000
|
1.000
|
Hsc_gene_4546.t1
|
Hsc_gene_4546.t1
|
— |
P34436.1 Probable methionine-R-sulfoxide reductase B [Caenorhabditis elegans]
|
KAH7731109.1 peptide methionine sulfoxide reductase msrB [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006979|GO:0016671|GO:0030091|GO:0033743
|
GO:0005575_0.833|GO:0110165_0.830|GO:0008150_0.825|GO:0005622_0.751|GO:0005737_0.728|GO:0003674_0.579|GO:0016020_0.557|GO:0050896_0.549|GO:0043226_0.541|GO:0043229_0.526|GO:0043227_0.520|GO:0043231_0.507
|
IPR002579+39-142_40-162_42-143+|IPR011057+38-148+|IPR028427+24-141+
|
— |
PF01641+42-143+SelR_domain
|
— |
PTHR10173+24-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-52
|
1.000
|
53-162
|
2k8d_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
17889.080
|
7.182
|
2.000
|
27.160
|
13.580
|
46.914
|
53.086
|
14.815
|
12.346
|
53.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1286.974
|
2576.967
|
1949.192
|
1642.331
|
1456.585
|
1441.924
|
1425.755
|
1712.423
|
688.622
|
537.104
|
602.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.632
|
-0.787
|
-0.138
|
-0.205
|
— | — | — | — | — |
1.401
|
— | — |
3.596
|
No JSON data available for plots.