Hg_chrom2_TN10mRNA_4104
Organism: Heterodera glycines Gene Locus: chr2:9625335-9625712 Feature type: polypeptideProtein Sequence
Length: 92
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.264 | 0.758 | 0.395 | 0.0 | 1.087 | 0.557 | 0.388 | 1.63 | 1.691 | 0.734 | 1.153 | 1.918 | 0.604 | 0.418 | 1.553 | 1.708 | 1.069 | 1.482 | 0.0 | 1.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3891
|
— | — |
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.347
|
0.058
|
0.384
|
0.158
|
0.039
|
0.233
|
0.030
|
0.044
|
0.267
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000150
|
8.000
|
5.000
|
Hsc_gene_22290.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
Hsc_gene_22290.t1;Hsc_gene_4516.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
B0035.8;C50F4.5;F07B7.11;F07B7.4;F08G2.1;F17E9.9;F35H10.11;F45F2.12;F45F2.2;F54E12.4;F55G1.3;H02I12.6;K06C4.12;K06C4.4;T10C6.11;ZK131.5;ZK131.9
|
P04255.4 Histone H2B 1 [Caenorhabditis elegans]
|
KJH51597.1 core histone H2A/H2B/H3/H4 [Dictyocaulus viviparus]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.922|GO:0110165_0.916|GO:0005622_0.825|GO:0043226_0.775|GO:0043229_0.767|GO:0016020_0.716|GO:0043227_0.652|GO:0043231_0.644|GO:0005634_0.506
|
IPR000558+2-90_4-22_5-92_23-43_45-62_59-81_62-75_75-88+|IPR007125+6-67+|IPR009072+3-92_6-92+
|
SM00427+2-90+
|
PF00125+6-67+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000016+3-92+Histone_H2B
|
PTHR23428+5-92+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-92
|
1.000
|
1-88
|
6k09_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
10254.820
|
10.452
|
7.500
|
27.174
|
9.783
|
51.087
|
48.913
|
18.478
|
8.696
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
124.541
|
54.332
|
11.999
|
8.604
|
13.757
|
17.532
|
109.261
|
174.672
|
2.410
|
396.750
|
227.747
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.413
|
-2.793
|
— | — | — |
2.652
|
3.209
|
-0.532
|
-7.556
|
— |
-4.740
|
— | — |
No JSON data available for plots.