Hg_chrom2_TN10mRNA_4106
Organism: Heterodera glycines Gene Locus: chr2:9630877-9637287 Feature type: polypeptideProtein Sequence
Length: 973
(Signal peptide: 1-39)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.159 | 0.693 | 0.691 | 0.815 | 0.856 | 1.001 | 0.722 | 1.49 | 0.845 | 1.736 | 0.545 | 1.209 | 1.313 | 0.712 | 1.678 | 1.189 | 0.859 | 1.043 | 1.265 | 0.514 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3893
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.623
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKSVRWAPPRDATLVHRRR,RRCSARILSTVANQLRLRR
|
25-51
|
0.992
|
35-60
|
0.999
|
1-39
|
0.954
|
0.894
|
7.000
|
7.000
|
0.043
|
0.046
|
0.020
|
0.098
|
0.267
|
0.425
|
0.446
|
0.007
|
0.919
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007232
|
1.000
|
1.000
|
Hsc_gene_4538.t1
|
Hsc_gene_4538.t1
|
— |
G5ECB2.1 Gamma-aminobutyric acid type B receptor subunit 2 [Caenorhabditis elegans]
|
KAI1715550.1 7 transmembrane sweet-taste receptor of 3 GCPR domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0004965|GO:0007186|GO:0016020
|
GO:0005575_0.922|GO:0110165_0.921|GO:0005886_0.878|GO:0016020_0.878|GO:0071944_0.878|GO:0008150_0.856|GO:0009987_0.759|GO:0003674_0.704|GO:0065007_0.701|GO:0050789_0.675|GO:0050896_0.673|GO:0050794_0.656|GO:0051716_0.618|GO:0007154_0.616|GO:0023052_0.608|GO:0007165_0.573|GO:0005622_0.552|GO:0060089_0.541|GO:0038023_0.535|GO:0004888_0.534|GO:0007267_0.533|GO:0007186_0.523
|
IPR000337+23-42_595-616_631-654_718-739+|IPR001828+82-470+|IPR002455+82-792+|IPR017978+511-774_515-775+|IPR028082+47-495+
|
— |
PF00003+511-774+7_transmembrane_sweet-taste_receptor_of_3_GCPR|PF01094+82-470+Receptor_family_ligand_binding_region
|
— |
PTHR10519+82-792+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
969-973
|
1.000
|
1-968
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
108328.110
|
9.565
|
42.500
|
23.741
|
11.100
|
44.193
|
55.807
|
14.800
|
8.941
|
49.332
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
432.147
|
328.675
|
1736.219
|
528.465
|
121.515
|
210.474
|
144.722
|
995.967
|
82.526
|
303.986
|
209.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.173
|
0.547
|
-1.608
|
-2.152
|
0.807
|
-0.530
|
2.141
|
-2.641
|
— |
2.863
|
— | — | — |