Hg_chrom2_TN10mRNA_4107
Organism: Heterodera glycines Gene Locus: chr2:9638438-9642746 Feature type: polypeptideProtein Sequence
Length: 782
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.234 | 0.833 | 0.907 | 0.088 | 1.343 | 1.869 | 0.761 | 1.343 | 0.426 | 0.933 | 0.504 | 1.429 | 0.462 | 1.451 | 1.592 | 1.735 | 1.174 | 0.581 | 0.197 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3894
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KVKK,RRRRRGRRR,RRDNAGEEEEEEEERRRRR,KKTSSPERSAGASGGRRRS
|
— | — |
49-89
|
0.780
|
— | — |
0.000
|
— | — |
0.337
|
0.309
|
0.023
|
0.624
|
0.074
|
0.125
|
0.172
|
0.052
|
0.349
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001872
|
2.000
|
2.000
|
Hsc_gene_4537.t1;Hsc_gene_4537.t2
|
Hsc_gene_4537.t1;Hsc_gene_4537.t2
|
— |
Q8STF6.1 Dystrophin-like protein 1 [Caenorhabditis elegans]
|
KAI6232304.1 CRE-DYC-1 protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.950|GO:0110165_0.949|GO:0008150_0.828|GO:0005622_0.796|GO:0065007_0.795|GO:0009987_0.793|GO:0016020_0.782|GO:0050789_0.782|GO:0043226_0.763|GO:0043229_0.749|GO:0003674_0.714|GO:0032501_0.705|GO:0016043_0.686|GO:0071840_0.686|GO:0005737_0.617|GO:0032502_0.586|GO:0048856_0.586|GO:0048518_0.562|GO:0071944_0.544|GO:0030154_0.530|GO:0048869_0.530|GO:0043228_0.527|GO:0043232_0.527|GO:0005886_0.524|GO:0048468_0.516
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-231;286-782
|
1.000
|
232-285
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
84530.590
|
6.170
|
-4.500
|
26.854
|
5.754
|
57.033
|
42.967
|
13.811
|
13.043
|
56.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
837.256
|
172.000
|
177.685
|
113.415
|
224.103
|
201.216
|
906.148
|
230.857
|
0.691
|
2902.941
|
1659.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.738
|
-0.537
|
0.950
|
— |
2.182
|
— |
2.114
|
-11.814
|
7.199
|
-3.277
|
— | — |
No JSON data available for plots.