Hg_chrom2_TN10mRNA_4109
Organism: Heterodera glycines Gene Locus: chr2:9646912-9654435 Feature type: polypeptideProtein Sequence
Length: 927
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.167 | 0.803 | 0.922 | 0.223 | 1.205 | 1.743 | 0.693 | 1.241 | 0.527 | 0.948 | 0.637 | 1.586 | 0.599 | 1.307 | 1.673 | 1.695 | 1.026 | 0.752 | 0.249 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3896
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.556
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRKKRQK,RRRRRGRRR,RRVRYEFKARNIKKRAV,RRDNAGEEEEEERRRRRGR,RRFSLQANDLEPEQHKVKK,KKTSSPERSAGASGGRRRS
|
29-50
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.309
|
0.292
|
0.015
|
0.695
|
0.104
|
0.112
|
0.210
|
0.018
|
0.365
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001872
|
2.000
|
2.000
|
Hsc_gene_4537.t1;Hsc_gene_4537.t2
|
Hsc_gene_4537.t1;Hsc_gene_4537.t2
|
— |
Q8STF6.1 Dystrophin-like protein 1 [Caenorhabditis elegans]
|
KAI6232304.1 CRE-DYC-1 protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.946|GO:0110165_0.945|GO:0008150_0.808|GO:0005622_0.773|GO:0009987_0.771|GO:0016020_0.761|GO:0065007_0.760|GO:0050789_0.742|GO:0043226_0.737|GO:0043229_0.724|GO:0003674_0.708|GO:0032501_0.673|GO:0016043_0.660|GO:0071840_0.660|GO:0005737_0.599|GO:0032502_0.530|GO:0048856_0.530|GO:0071944_0.514
|
IPR006020+6-156_39-148_81-145+|IPR011993+16-156+|IPR051133+38-339+
|
SM00462+6-156+
|
PF00640+39-148+Phosphotyrosine_interaction_domain_(PTB/PID)
|
— |
PTHR11232+38-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-378;433-927
|
2.000
|
1-148;379-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
101330.370
|
7.866
|
12.500
|
27.184
|
6.580
|
55.556
|
44.444
|
14.887
|
12.298
|
54.908
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightyellow
|
737.834
|
549.920
|
449.162
|
274.746
|
532.251
|
542.298
|
956.162
|
640.481
|
22.274
|
1731.938
|
999.225
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.524
|
-1.138
|
-0.599
|
0.922
|
— |
0.828
|
— |
0.717
|
-6.426
|
— | — | — | — |
No JSON data available for plots.