Hg_chrom2_TN10mRNA_4110
Organism: Heterodera glycines Gene Locus: chr2:9655965-9657569 Feature type: polypeptideProtein Sequence
Length: 285
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.183 | 1.224 | 0.574 | 0.726 | 0.468 | 1.709 | 1.003 | 0.877 | 1.014 | 1.754 | 0.319 | 1.445 | 1.852 | 1.282 | 0.215 | 1.253 | 0.633 | 0.744 | 1.08 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3897
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.177
|
0.139
|
0.011
|
0.148
|
0.745
|
0.677
|
0.795
|
0.094
|
0.349
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003425
|
2.000
|
1.000
|
Hsc_gene_4536.t1
|
— | — |
Q7SXS2.1 Protein YIPF5 [Xenopus laevis]
|
KAF7637233.1 Protein YIPF [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888|GO:0016020
|
GO:0005575_0.932|GO:0110165_0.932|GO:0008150_0.921|GO:0016020_0.898|GO:0071944_0.896|GO:0005886_0.881|GO:0009987_0.868|GO:0005622_0.796|GO:0005737_0.777|GO:0043226_0.764|GO:0043227_0.754|GO:0005773_0.750|GO:0043229_0.750|GO:0043231_0.750|GO:0012505_0.725|GO:0051179_0.640|GO:0051234_0.630|GO:0006810_0.625|GO:0065007_0.507
|
IPR006977+143-282+|IPR045231+65-283+
|
— |
PF04893+143-282+Yip1_domain
|
— |
PTHR21236+65-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89
|
1.000
|
90-285
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
30803.280
|
4.671
|
-5.500
|
10.877
|
14.035
|
35.439
|
64.561
|
4.912
|
5.965
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
819.204
|
790.204
|
539.333
|
711.551
|
1026.270
|
879.672
|
1434.774
|
499.605
|
233.214
|
1203.581
|
787.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.781
|
-0.288
|
0.509
|
0.496
|
-0.207
|
0.716
|
-0.920
|
1.664
|
— | — | — | — | — |
No JSON data available for plots.