Hg_chrom2_TN10mRNA_4111
Organism: Heterodera glycines Gene Locus: chr2:9657816-9659627 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 0.677 | 1.471 | 1.004 | 1.888 | 0.83 | 0.501 | 0.971 | 1.51 | 0.831 | 1.128 | 0.952 | 1.259 | 0.871 | 1.651 | 0.74 | 0.955 | 1.177 | 0.498 | 0.19 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3898
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.577
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRRP,KKCIGELCAQRIRKRPT
|
— | — |
35-59
|
0.997
|
— | — |
0.000
|
— | — |
0.566
|
0.214
|
0.059
|
0.701
|
0.075
|
0.219
|
0.192
|
0.013
|
0.041
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007233
|
1.000
|
1.000
|
Hsc_gene_4535.t1
|
Hsc_gene_24538.t2;Hsc_gene_4535.t1;Hsc_gene_4535.t2
|
— |
Q0VCI6.1 PIH1 domain-containing protein 1 [Bos taurus]
|
KAF7637234.1 PIH1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.907|GO:0110165_0.903|GO:0005622_0.865|GO:0043226_0.808|GO:0016020_0.805|GO:0043227_0.741|GO:0008150_0.704|GO:0009987_0.647|GO:0043229_0.626|GO:0043231_0.569|GO:0071840_0.531|GO:0016043_0.524|GO:0032991_0.504|GO:0005634_0.501
|
IPR012981+12-178+|IPR050734+17-305+
|
— |
PF08190+12-178+PIH1_N-terminal_domain
|
— |
PTHR22997+17-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;174-219
|
2.000
|
18-173;220-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
35312.020
|
4.969
|
-9.000
|
36.893
|
7.767
|
54.045
|
45.955
|
17.476
|
19.417
|
47.573
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
1226.074
|
1832.212
|
651.629
|
670.377
|
740.058
|
517.103
|
963.975
|
498.908
|
2498.193
|
1287.582
|
1806.415
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.722
|
-1.588
|
0.150
|
— |
-0.503
|
0.910
|
— |
1.094
|
— |
-1.766
|
— | — | — |
No JSON data available for plots.