Hg_chrom2_TN10mRNA_4112
Organism: Heterodera glycines Gene Locus: chr2:9659653-9660827 Feature type: polypeptideProtein Sequence
Length: 239
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.973 | 0.609 | 0.433 | 1.046 | 1.18 | 0.946 | 0.837 | 1.116 | 1.64 | 0.697 | 1.477 | 1.395 | 1.046 | 1.708 | 0.478 | 1.235 | 0.571 | 0.966 | 1.231 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3899
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.214
|
0.844
|
0.228
|
0.178
|
0.044
|
0.164
|
0.029
|
0.025
|
0.055
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007234
|
1.000
|
1.000
|
Hsc_gene_4534.t1
|
Hsc_gene_24537.t1;Hsc_gene_4534.t1
|
— | — |
NP_001123059.1 transcellular chaperone signaling (x)cross tissue [Caenorhabditis elegans];CCD71774.1 transcellular chaperone signaling (x)cross tissue [Caenorhabditis elegans]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013869+22-181+
|
— |
PF08560+22-181+Protein_of_unknown_function_(DUF1757)
|
— |
PTHR38636+32-184+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;220-239
|
1.000
|
7-219
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
27235.420
|
9.770
|
10.000
|
24.268
|
12.134
|
43.933
|
56.067
|
14.644
|
9.623
|
44.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
889.150
|
715.141
|
702.529
|
596.412
|
918.716
|
786.579
|
1120.370
|
890.856
|
1073.913
|
935.620
|
994.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.255
|
-0.399
|
-0.127
|
0.591
|
-0.209
|
0.521
|
— |
0.473
|
— | — | — | — | — |
No JSON data available for plots.