Hg_chrom2_TN10mRNA_4113
Organism: Heterodera glycines Gene Locus: chr2:9661284-9666801 Feature type: polypeptideProtein Sequence
Length: 1,139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.755 | 1.006 | 0.848 | 0.849 | 1.171 | 0.512 | 1.493 | 1.073 | 1.898 | 0.705 | 0.826 | 1.585 | 0.827 | 1.362 | 1.179 | 0.95 | 1.078 | 0.81 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3900
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
88-108
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.455
|
0.201
|
0.056
|
0.537
|
0.147
|
0.466
|
0.269
|
0.092
|
0.161
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007235
|
1.000
|
1.000
|
Hsc_gene_4533.t1
|
Hsc_gene_4533.t1;Hsc_gene_4533.t2
|
— |
Q7Z3V4.3 Ubiquitin-protein ligase E3B [Homo sapiens]
|
KAI1727331.1 HECT-domain (ubiquitin-transferase) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000209|GO:0004842|GO:0061630
|
GO:0005575_0.831|GO:0110165_0.830|GO:0008150_0.826|GO:0009987_0.741|GO:0005622_0.682|GO:0016020_0.646|GO:0065007_0.626|GO:0003674_0.619|GO:0050789_0.611|GO:0050794_0.587|GO:0043226_0.578|GO:0043229_0.564|GO:0005737_0.539|GO:0008152_0.502
|
IPR000569+753-1137_771-1139_773-1139_809-1139+|IPR035983+749-1131+|IPR044611+21-1139+
|
SM00119+771-1139+
|
PF00632+809-1139+HECT-domain_(ubiquitin-transferase)
|
G3DSA:3.30.2160.10:FF:000002+878-959+Putative_Ubiquitin-protein_ligase_E3C
|
PTHR45700+21-1139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
128561.600
|
8.087
|
25.000
|
24.934
|
11.238
|
46.795
|
53.205
|
14.311
|
10.623
|
47.498
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1139.205
|
1477.416
|
1327.718
|
841.692
|
908.690
|
1044.034
|
3932.520
|
978.284
|
576.222
|
610.472
|
595.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.384
|
-0.949
|
-0.549
|
— | — |
1.924
|
— |
2.150
|
— | — | — | — | — |
No JSON data available for plots.