SCN Proteipedia

Hg_chrom2_TN10mRNA_4115

Organism: Heterodera glycines Gene Locus: chr2:9670960-9676231 Feature type: polypeptide

Protein Sequence

Length: 617

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.735	1.583	0.943	1.397	0.999	1.205	0.733	1.053	0.828	0.767	0.909	0.858	1.801	0.499	1.389	1.227	0.771	1.179	1.496	0.858	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3902	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RTKWRK,RKAIYERELRGVLKRNKRF	—	—	2-82	0.943	—	—	0.000	—	—	0.830	0.135	0.072	0.358	0.121	0.048	0.037	0.008	0.081	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000791	5.000	1.000	Hsc_gene_4531.t1	Hsc_gene_4531.t1;Hsc_gene_4532.t1	—	Q28CQ7.2 Histone-lysine N-methyltransferase SUV39H2 [Xenopus tropicalis]	KAI1700469.1 SET domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005634\|GO:0008270\|GO:0042054	GO:0008150_0.887\|GO:0009987_0.824\|GO:0005575_0.814\|GO:0003674_0.809\|GO:0110165_0.801\|GO:0005622_0.716\|GO:0071840_0.694\|GO:0065007_0.683\|GO:0016043_0.679\|GO:0008152_0.667\|GO:0050789_0.662\|GO:0043226_0.657\|GO:0050794_0.651\|GO:0016020_0.648\|GO:0043170_0.644\|GO:0043229_0.636\|GO:0005488_0.631\|GO:0006325_0.611\|GO:0006338_0.610\|GO:0003824_0.602\|GO:0044237_0.592\|GO:0009058_0.586\|GO:0044249_0.572\|GO:0043227_0.566\|GO:0009059_0.563\|GO:0043231_0.556\|GO:0019222_0.553\|GO:0016740_0.550\|GO:0060255_0.545\|GO:0010467_0.529\|GO:0031323_0.524\|GO:0140096_0.522\|GO:0048519_0.520\|GO:0009889_0.508\|GO:0031326_0.508\|GO:0010468_0.507\|GO:0010556_0.507\|GO:0048523_0.507\|GO:0008168_0.506\|GO:0016741_0.506	IPR000953+245-302_246-309+\|IPR001214+470-590_470-596_481-589+\|IPR003616+600-616+\|IPR007728+402-467+\|IPR016197+238-304+\|IPR023780+246-300+\|IPR046341+355-616_362-613+\|IPR051357+328-614+	SM00298+245-302+\|SM00317+470-596+	PF00385+246-300+Chromo_(CHRromatin_Organisation_MOdifier)_domain\|PF00856+481-589+SET_domain	—	PTHR45660+328-614+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-98	1.000	99-617	7w67_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.836	70252.130	8.252	16.500	26.094	13.452	50.891	49.109	14.911	11.183	52.188

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	1504.495	1932.453	749.181	1215.081	1715.874	1176.076	1475.812	887.555	1038.781	2371.068	1800.088

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.597	-0.807	0.807	0.466	-0.530	0.337	-0.509	0.875	—	—	—	—	—

No JSON data available for plots.

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