Hg_chrom2_TN10mRNA_4116
Organism: Heterodera glycines Gene Locus: chr2:9677491-9685393 Feature type: polypeptideProtein Sequence
Length: 1,105
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 0.8 | 0.938 | 1.092 | 0.935 | 1.021 | 0.646 | 0.905 | 1.388 | 1.394 | 1.028 | 2.076 | 1.584 | 0.644 | 1.625 | 0.646 | 0.786 | 1.124 | 1.114 | 0.772 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3903
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKSK,KRLKDRRPKDKRMRT,RKHYLRITSMRMTRR,GEKSVKRKKAQKRSN,RRGREQLKAQLKRLKDRRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.147
|
0.143
|
0.045
|
0.310
|
0.429
|
0.254
|
0.223
|
0.031
|
0.659
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007237
|
1.000
|
1.000
|
Hsc_gene_4530.t1
|
Hsc_gene_4530.t1
|
— | — |
KAF7635580.1 DC_STAMP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.762|GO:0110165_0.762|GO:0008150_0.734|GO:0009987_0.702|GO:0005622_0.626|GO:0005737_0.560|GO:0016020_0.543
|
IPR012858+455-646+|IPR029063+916-1048_916-1084+|IPR051856+76-729+
|
— |
PF07782+455-646+DC-STAMP-like_protein
|
— |
PTHR21041+76-729+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1105
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.641
|
127193.100
|
9.566
|
54.000
|
27.330
|
11.584
|
44.072
|
55.928
|
16.561
|
10.769
|
43.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
383.454
|
122.874
|
136.610
|
162.700
|
294.439
|
293.822
|
298.337
|
133.489
|
122.484
|
1044.899
|
649.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.268
|
0.361
|
0.825
|
— | — |
-1.245
|
1.303
|
-3.211
|
— | — | — | — |
No JSON data available for plots.