Hg_chrom2_TN10mRNA_4117
Organism: Heterodera glycines Gene Locus: chr2:9685738-9687924 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.284 | 1.18 | 1.085 | 0.103 | 1.692 | 0.995 | 0.569 | 1.194 | 0.995 | 1.291 | 0.905 | 0.702 | 1.078 | 0.517 | 1.645 | 0.512 | 0.832 | 1.221 | 0.689 | 0.878 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3904
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.779
|
0.098
|
0.007
|
0.536
|
0.100
|
0.100
|
0.117
|
0.003
|
0.041
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000388
|
6.000
|
2.000
|
Hsc_gene_4528.t1;Hsc_gene_8874.t1
|
Hsc_gene_4528.t1
|
— |
Q04908.1 26S proteasome non-ATPase regulatory subunit 3 [Caenorhabditis elegans]
|
KAF7637239.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000502|GO:0030234|GO:0042176
|
GO:0005575_0.803|GO:0110165_0.791|GO:0005622_0.733|GO:0008150_0.679|GO:0032991_0.588|GO:0016020_0.585|GO:0043226_0.541|GO:0043229_0.539|GO:0005737_0.522
|
IPR000717+181-248_192-287+|IPR013586+270-333+|IPR050756+23-326+
|
SM00088+192-287+|SM00753+16-192+
|
PF01399+181-248+PCI_domain|PF08375+270-333+Proteasome_regulatory_subunit_C-terminal
|
— |
PTHR10758+23-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;303-335
|
1.000
|
15-302
|
6wjn_V
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
38100.050
|
5.921
|
-3.000
|
32.537
|
10.149
|
50.149
|
49.851
|
16.418
|
16.119
|
46.567
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1430.040
|
2374.565
|
1247.829
|
1667.692
|
1651.888
|
1392.440
|
804.627
|
1256.996
|
1158.089
|
1489.346
|
1347.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.157
|
-0.647
|
0.526
|
— |
-0.231
|
-0.781
|
— |
-0.501
|
— | — | — | — | — |
No JSON data available for plots.