SCN Proteipedia

Hg_chrom2_TN10mRNA_4123

Organism: Heterodera glycines Gene Locus: chr2:9712722-9717094 Feature type: polypeptide

Protein Sequence

Length: 1,056

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.112	1.277	1.222	0.522	1.152	0.923	0.609	1.136	1.01	1.229	0.904	1.393	1.578	0.819	0.889	0.947	0.916	1.047	0.728	0.724	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3910	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.799	0.184	0.011	0.368	0.086	0.068	0.071	0.006	0.028	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003429	2.000	1.000	Hsc_gene_4521.t1	Hsc_gene_17148.t1;Hsc_gene_4521.t1;Hsc_gene_4521.t2;Hsc_gene_4525.t1	—	Q29504.1 Ubiquitin-like modifier-activating enzyme 1 [Oryctolagus cuniculus]	KAF7629989.1 UBA_e1_C domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008641\|GO:0036211	GO:0008150_0.883\|GO:0003674_0.789\|GO:0008152_0.724\|GO:0005575_0.696\|GO:0003824_0.692\|GO:0044238_0.690\|GO:0110165_0.679\|GO:0043170_0.656\|GO:0019538_0.628\|GO:0043412_0.596\|GO:0005622_0.595\|GO:0036211_0.593\|GO:0140096_0.586\|GO:0043687_0.580\|GO:0032446_0.579\|GO:0070647_0.579\|GO:0016787_0.522\|GO:0016020_0.520	IPR000011+68-92_181-208_489-512_536-561_690-717+\|IPR000594+47-415_442-945+\|IPR018075+42-1056+\|IPR018965+926-1051_959-1051+\|IPR019572+629-883+\|IPR032420+292-355+\|IPR033127+621-629+\|IPR035985+42-419_435-943+\|IPR038252+961-1055+\|IPR042063+614-890+\|IPR042302+207-290+\|IPR042449+38-155+\|IPR045886+267-1015+	SM00985+926-1051+	PF00899+47-415_442-945+ThiF_family\|PF09358+959-1051+Ubiquitin_fold_domain\|PF10585+629-883+Ubiquitin-activating_enzyme,_SCCH_domain\|PF16191+292-355+Ubiquitin-activating_enzyme_E1_four-helix_bundle	G3DSA:1.10.10.2660:FF:000001+614-890+Ubiquitin-activating_enzyme_E1_1\|G3DSA:3.10.290.60:FF:000001+961-1055+Ubiquitin-activating_enzyme_E1_2\|G3DSA:3.40.50.720:FF:000015+462-625+Ubiquitin-activating_enzyme_E1_1\|G3DSA:3.50.50.80:FF:000001+37-155+ubiquitin-like_modifier-activating_enzyme_1	PTHR10953+267-1015+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1056	4p22_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.562	117740.370	5.060	-23.000	26.231	11.364	47.538	52.462	12.595	13.636	51.799

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	5486.325	6781.327	4345.142	6691.461	7914.013	7633.955	8557.627	6262.540	3604.783	3229.311	3390.227

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.871	-0.156	0.731	0.210	—	0.175	-0.391	0.594	—	—	—	—	—

No JSON data available for plots.

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