SCN Proteipedia

Hg_chrom2_TN10mRNA_4124

Organism: Heterodera glycines Gene Locus: chr2:9717851-9719962 Feature type: polypeptide

Protein Sequence

Length: 443

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.577	0.735	1.026	0.078	2.107	1.215	0.833	1.242	0.502	0.519	1.95	0.531	0.564	0.695	1.336	1.193	1.11	1.026	1.563	0.929	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3911	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRIR,KRVK,PKTPSKKKKKRSRY,KKFPSLTDAFKKKRGN	—	—	—	—	—	—	0.000	—	—	0.958	0.065	0.006	0.235	0.018	0.025	0.036	0.007	0.063	0.113

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007241	1.000	1.000	Hsc_gene_4520.t1	Hsc_gene_4520.t1	—	P05205.2 Heterochromatin protein 1 [Drosophila melanogaster]	XP_050056603.1 chromobox protein homolog 5-like isoform X1 [Aphis gossypii]	No	-0.340

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.900\|GO:0110165_0.900\|GO:0005622_0.881\|GO:0008150_0.851\|GO:0043226_0.843\|GO:0043229_0.832\|GO:0009987_0.808\|GO:0016020_0.808\|GO:0043227_0.770\|GO:0003674_0.765\|GO:0043231_0.744\|GO:0005488_0.735\|GO:0005634_0.719\|GO:0065007_0.691\|GO:0050789_0.679\|GO:0050794_0.668\|GO:0008152_0.654\|GO:0043170_0.652\|GO:0009058_0.650\|GO:0044237_0.646\|GO:0009059_0.643\|GO:0044249_0.643\|GO:0010467_0.642\|GO:0043228_0.641\|GO:0043232_0.641\|GO:0005515_0.624\|GO:0019222_0.617\|GO:0031323_0.613\|GO:0044238_0.610\|GO:0060255_0.608\|GO:0009889_0.603\|GO:0006139_0.600\|GO:0031326_0.598\|GO:0010468_0.597\|GO:0010556_0.597\|GO:0048519_0.582\|GO:0090304_0.581\|GO:0034654_0.574\|GO:0141187_0.569\|GO:0048523_0.567\|GO:0016070_0.564\|GO:0032774_0.557\|GO:0009892_0.546\|GO:0010605_0.545\|GO:0031324_0.543\|GO:0009890_0.538\|GO:0010558_0.538\|GO:0031327_0.538\|GO:0080090_0.524\|GO:0019219_0.502	IPR000953+42-94_43-101_225-277_226-284_302-354_303-361+\|IPR016197+42-95_214-278_295-357+\|IPR017984+223-231_236-250_251-263+\|IPR023779+243-263_320-340+\|IPR023780+44-92_226-274_303-351+\|IPR051219+284-439+	SM00298+42-94_225-277_302-354+	PF00385+44-92_226-274_303-351+Chromo_(CHRromatin_Organisation_MOdifier)_domain	—	PTHR22812+284-439+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-50;95-443	1.000	51-94	3dm1_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.759	50841.230	9.233	10.500	40.181	9.707	63.205	36.795	21.896	18.284	46.501

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	3238.594	3659.521	2096.625	3228.519	4888.908	3714.419	5674.641	1741.600	2703.571	2764.584	2738.435

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.033	-0.318	0.732	0.567	-0.382	0.623	-1.197	1.847	—	—	—	—	—

No JSON data available for plots.

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