SCN Proteipedia

Hg_chrom2_TN10mRNA_4126

Organism: Heterodera glycines Gene Locus: chr2:9723703-9727474 Feature type: polypeptide

Protein Sequence

Length: 513

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.816	1.133	1.099	0.403	1.689	1.15	1.276	2.242	0.91	0.896	0.502	1.261	0.921	0.787	1.671	0.668	0.927	0.945	0.6	0.573	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3913	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.689

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRP,RRRR,KRSKNIIYWKGGKFRRP	—	—	1-60	0.728	—	—	0.000	—	—	0.900	0.115	0.041	0.328	0.026	0.049	0.090	0.001	0.057	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007243	1.000	1.000	Hsc_gene_4518.t1	Hsc_gene_4518.t1	—	Q62814.1 Transcription factor E2F5 [Rattus norvegicus]	KAI1720940.1 e2F/DP family winged-helix DNA-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0005667\|GO:0006355\|GO:0006357\|GO:0046983	GO:0008150_0.897\|GO:0003674_0.871\|GO:0009987_0.835\|GO:0005488_0.812\|GO:0065007_0.794\|GO:0005575_0.789\|GO:0110165_0.789\|GO:0050789_0.778\|GO:0050794_0.756\|GO:0008152_0.736\|GO:0005622_0.727\|GO:0097159_0.710\|GO:0044237_0.708\|GO:0044238_0.700\|GO:0009058_0.696\|GO:0043170_0.690\|GO:0003676_0.683\|GO:0044249_0.667\|GO:0009059_0.660\|GO:0016020_0.659\|GO:0019222_0.657\|GO:0060255_0.654\|GO:0006139_0.649\|GO:0010467_0.648\|GO:0031323_0.641\|GO:0003677_0.636\|GO:0080090_0.634\|GO:0034654_0.628\|GO:0043226_0.626\|GO:0009889_0.620\|GO:0010556_0.619\|GO:0031326_0.619\|GO:0090304_0.619\|GO:0010468_0.617\|GO:0141187_0.616\|GO:0016070_0.605\|GO:0019219_0.601\|GO:0032774_0.597\|GO:0043229_0.588\|GO:0051252_0.585\|GO:0043227_0.584\|GO:0006351_0.581\|GO:0006355_0.581\|GO:2001141_0.581\|GO:0043565_0.561\|GO:0043231_0.548\|GO:0048518_0.527\|GO:0048522_0.525\|GO:0005634_0.514	IPR003316+140-206_142-206+\|IPR015633+128-446+\|IPR032198+229-331+\|IPR036388+136-208+\|IPR036390+140-204+\|IPR037241+225-332+	SM01372+140-206+	PF02319+142-206+E2F/DP_family_winged-helix_DNA-binding_domain\|PF16421+229-331+E2F_transcription_factor_CC-MB_domain	G3DSA:1.10.10.10:FF:000008+134-208+E2F_transcription_factor_1	PTHR12081+128-446+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	38-99;332-513	2.000	1-37;100-331	1cf7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.552	57087.090	5.468	-12.500	32.164	10.526	51.852	48.148	15.984	16.179	50.487

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	1022.624	1432.187	1125.892	919.058	907.977	810.083	762.085	882.692	694.832	1387.865	1090.851

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.577	-0.777	-0.184	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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