Hg_chrom2_TN10mRNA_4128
Organism: Heterodera glycines Gene Locus: chr2:9734401-9735542 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.958 | 0.958 | 0.642 | 0.0 | 0.98 | 0.452 | 0.56 | 1.471 | 1.046 | 0.397 | 1.693 | 1.038 | 0.654 | 0.566 | 1.561 | 2.017 | 1.254 | 1.604 | 0.0 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3915
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKPS,KPSGKGAKKAVKSTKAVRTGDKKRRKARK
|
18-64
|
0.920
|
— | — | — | — |
0.000
|
— | — |
0.749
|
0.288
|
0.072
|
0.423
|
0.082
|
0.078
|
0.133
|
0.002
|
0.197
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007245
|
1.000
|
1.000
|
Hsc_gene_4516.t1
|
Hsc_gene_4516.t1;Hsc_gene_4516.t2;Hsc_gene_8784.t1;Hsc_gene_8800.t1;Hsc_gene_8845.t1
|
F07B7.11;F07B7.4;F08G2.1;F17E9.9;F35H10.11;F45F2.12;F45F2.2;K06C4.12;K06C4.4;T10C6.11;ZK131.5;ZK131.9
|
Q27876.3 Probable histone H2B 4 [Caenorhabditis elegans]
|
KAI3409880.1 putative histone H2B 4 [Globodera pallida];KAI3411052.1 putative histone H2B 4 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.893|GO:0110165_0.893|GO:0005622_0.848|GO:0043226_0.828|GO:0043229_0.815|GO:0016020_0.733|GO:0043227_0.695|GO:0043231_0.681|GO:0005634_0.611|GO:0031974_0.511|GO:0043233_0.511|GO:0070013_0.511|GO:0031981_0.508
|
IPR000558+2-123_25-121_35-53_54-74_76-93_90-112_93-106_106-119+|IPR007125+7-98+|IPR009072+2-123_8-123+
|
SM00427+25-121+
|
PF00125+7-98+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000016+2-123+Histone_H2B
|
PTHR23428+2-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;108-170
|
1.000
|
28-107
|
3c9k_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
18729.240
|
10.883
|
18.500
|
31.176
|
8.235
|
58.824
|
41.176
|
21.765
|
9.412
|
55.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
618.585
|
1332.332
|
201.318
|
200.542
|
344.559
|
382.333
|
369.940
|
809.582
|
179.868
|
1206.182
|
766.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.957
|
-2.869
|
— |
0.748
|
— | — |
0.971
|
-0.986
|
-2.866
|
— |
-1.611
|
— | — |
No JSON data available for plots.