Hg_chrom2_TN10mRNA_4130
Organism: Heterodera glycines Gene Locus: chr2:9737614-9741264 Feature type: polypeptideProtein Sequence
Length: 625
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.116 | 1.042 | 0.902 | 0.883 | 0.987 | 0.697 | 0.629 | 1.44 | 0.889 | 1.405 | 0.533 | 1.035 | 1.333 | 1.138 | 1.6 | 0.96 | 0.918 | 0.848 | 1.6 | 0.988 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3917
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.882
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— |
RRKLKVPSSSAEKRKAL
|
— | — | — | — |
1-36
|
0.896
|
0.999
|
0.000
|
0.000
|
0.177
|
0.222
|
0.063
|
0.298
|
0.269
|
0.196
|
0.258
|
0.229
|
0.201
|
0.590
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007246
|
1.000
|
1.000
|
Hsc_gene_4514.t1
|
Hsc_gene_4514.t1
|
— |
Q10916.2 Sphingomyelin phosphodiesterase 1 [Caenorhabditis elegans]
|
KAI1716307.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004767|GO:0006685|GO:0016787
|
GO:0008150_0.905|GO:0009987_0.844|GO:0005575_0.802|GO:0110165_0.799|GO:0003674_0.713|GO:0008152_0.624|GO:0044237_0.603|GO:0003824_0.599|GO:0044238_0.576|GO:0009058_0.559|GO:0016787_0.544|GO:0044249_0.542|GO:0016020_0.532|GO:0016788_0.518|GO:0008081_0.505|GO:0042578_0.505|GO:0009056_0.502
|
IPR004843+162-432+|IPR008139+37-120+|IPR011001+40-112+|IPR011160+30-605+|IPR029052+161-492_162-447+|IPR041805+164-470+|IPR045473+453-568+
|
— |
PF00149+162-432+Calcineurin-like_phosphoesterase|PF19272+453-568+Acid_sphingomyelin_phosphodiesterase_C-terminal_region
|
— |
PTHR10340+40-577+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-625
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
70624.530
|
7.852
|
12.000
|
25.120
|
13.120
|
44.640
|
55.360
|
14.240
|
10.880
|
50.720
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
893.016
|
293.818
|
104.412
|
681.902
|
920.412
|
745.987
|
635.942
|
1366.239
|
37.140
|
2098.324
|
1214.960
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.723
|
1.078
|
2.816
|
0.402
|
-0.288
|
-0.221
|
0.758
|
-0.957
|
-5.934
|
— | — | — | — |