SCN Proteipedia

Hg_chrom2_TN10mRNA_4134

Organism: Heterodera glycines Gene Locus: chr2:9759415-9763893 Feature type: polypeptide

Protein Sequence

Length: 641

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.961	0.726	1.163	0.699	0.962	1.84	0.891	1.638	0.416	1.181	0.591	1.193	1.257	1.05	2.165	0.847	1.023	0.52	0.72	0.826	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3921	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRRRR,KRQRAARESARRRTV,RQPKKKEMRRRRAEERLRARGIDLEEFKRQRAARESARR	1-21	0.997	—	—	—	—	0.000	—	—	0.675	0.203	0.030	0.547	0.047	0.055	0.094	0.017	0.018	0.093

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000537	1.000	6.000	Hsc_gene_4510.t1;Hsc_gene_4510.t2;Hsc_gene_4510.t3;Hsc_gene_4510.t4;Hsc_gene_4510.t5;Hsc_gene_4510.t6	Hsc_gene_22156.t1;Hsc_gene_4510.t1;Hsc_gene_4510.t2;Hsc_gene_4510.t4;Hsc_gene_4510.t5;Hsc_gene_4510.t6	—	Q9Z2A5.2 Arginyl-tRNA--protein transferase 1 [Mus musculus]	KAF7635545.1 Arginyl-tRNA--protein transferase 1 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004057\|GO:0016598	GO:0008150_0.842\|GO:0005575_0.705\|GO:0110165_0.704\|GO:0008152_0.682\|GO:0044238_0.682\|GO:0003674_0.642\|GO:0005622_0.619\|GO:0016020_0.597\|GO:0009056_0.573\|GO:0043226_0.546\|GO:0043229_0.528\|GO:0043170_0.519	IPR007471+25-165+\|IPR007472+360-507+\|IPR016181+359-514+\|IPR017137+7-641+\|IPR030700+9-639+	—	PF04376+25-165+Arginine-tRNA-protein_transferase,_N_terminus\|PF04377+360-507+Arginine-tRNA-protein_transferase,_C_terminus	—	PTHR21367+9-639+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	161-342	2.000	1-160;343-641	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.817	72897.640	9.257	25.500	29.953	11.544	52.418	47.582	17.785	12.168	48.362

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1609.347	5292.241	1297.610	1058.023	1322.863	1751.678	2665.375	1429.991	996.494	736.854	848.128

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.259	-2.460	-0.185	0.291	0.419	0.616	-0.399	1.042	—	—	—	—	—

No JSON data available for plots.

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