Hg_chrom2_TN10mRNA_4135
Organism: Heterodera glycines Gene Locus: chr2:9764401-9766066 Feature type: polypeptideProtein Sequence
Length: 248
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.469 | 0.66 | 0.278 | 2.957 | 1.137 | 0.528 | 0.605 | 0.627 | 0.708 | 1.527 | 2.372 | 1.008 | 0.62 | 2.304 | 0.576 | 0.793 | 0.794 | 1.241 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3922
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKKK,KKKAKRDR
|
12-32
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.159
|
0.963
|
0.024
|
0.153
|
0.028
|
0.018
|
0.026
|
0.011
|
0.034
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007249
|
1.000
|
1.000
|
Hsc_gene_4509.t1
|
Hsc_gene_4509.t1
|
— | — |
KAH7726685.1 Protein K07A1.10 [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634
|
GO:0005575_0.937|GO:0110165_0.936|GO:0005622_0.918|GO:0043226_0.884|GO:0016020_0.860|GO:0043229_0.857|GO:0005737_0.814|GO:0043227_0.802|GO:0043231_0.757|GO:0005739_0.569|GO:0031974_0.504|GO:0043233_0.504
|
IPR018472+9-196_18-198+|IPR043035+25-147+
|
— |
PF10147+9-196+Growth_arrest_and_DNA-damage-inducible_proteins-interacting_protein_1
|
— |
PTHR31761+18-198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
165-248
|
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
29682.550
|
7.253
|
1.500
|
43.952
|
9.274
|
59.274
|
40.726
|
22.581
|
21.371
|
35.081
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
2375.330
|
1585.890
|
1441.544
|
1788.130
|
2158.757
|
1723.599
|
1709.364
|
942.716
|
2855.629
|
3994.099
|
3506.183
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.368
|
— |
0.420
|
0.240
|
-0.309
|
— |
-0.975
|
1.002
|
— | — | — | — | — |
No JSON data available for plots.