SCN Proteipedia

Hg_chrom2_TN10mRNA_4137

Organism: Heterodera glycines Gene Locus: chr2:9768812-9773213 Feature type: polypeptide

Protein Sequence

Length: 619

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.789	1.09	1.028	0.668	0.969	1.077	0.904	0.485	1.328	1.354	0.759	1.806	1.032	0.932	1.418	0.785	0.715	1.101	0.497	1.473	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3924	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.493

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.086	0.858	0.021	0.298	0.069	0.116	0.063	0.026	0.056	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007251	1.000	1.000	Hsc_gene_4507.t1	Hsc_gene_4507.t1	—	P27443.1 NAD-dependent malic enzyme, mitochondrial [Ascaris suum]	KAI1726789.1 malic enzyme, NAD binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004470\|GO:0016616\|GO:0051287	GO:0008150_0.882\|GO:0003674_0.859\|GO:0005575_0.821\|GO:0110165_0.819\|GO:0003824_0.762\|GO:0009987_0.735\|GO:0005622_0.732\|GO:0005737_0.693\|GO:0008152_0.690\|GO:0016020_0.644\|GO:0044237_0.632\|GO:0016491_0.580\|GO:0043226_0.571\|GO:0016614_0.560\|GO:0043229_0.557\|GO:0004470_0.555\|GO:0016615_0.555\|GO:0043227_0.543\|GO:0016616_0.535\|GO:0044281_0.535\|GO:0043231_0.529	IPR001891+16-594_123-147_185-214_221-243_281-299_306-322_337-353_438-454+\|IPR012301+117-300+\|IPR012302+310-560_310-561+\|IPR015884+306-322+\|IPR036291+310-605+\|IPR037062+51-307+\|IPR046346+33-309+	SM00919+310-561+\|SM01274+117-300+	PF00390+117-300+Malic_enzyme,_N-terminal_domain\|PF03949+310-560+Malic_enzyme,_NAD_binding_domain	G3DSA:3.40.50.10380:FF:000004+51-307+Malic_enzyme\|G3DSA:3.40.50.720:FF:000060+308-606+Malic_enzyme	PTHR23406+51-588+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-619	1o0s_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	69700.180	7.880	6.000	24.394	10.339	43.134	56.866	12.924	11.470	48.627

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1227.643	1714.625	1522.446	1212.458	1138.538	1738.360	1367.266	2162.086	567.449	874.436	742.870

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.400	-0.637	-0.220	-0.123	0.625	-0.337	0.209	-0.518	—	—	—	—	—

No JSON data available for plots.

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