Hg_chrom2_TN10mRNA_4140
Organism: Heterodera glycines Gene Locus: chr2:9792442-9793464 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.292 | 0.904 | 0.909 | 0.575 | 0.648 | 0.997 | 0.595 | 1.667 | 0.864 | 1.201 | 0.337 | 2.614 | 1.852 | 1.068 | 1.361 | 1.27 | 0.729 | 1.01 | 1.282 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3927
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
21-81
|
0.944
|
— | — |
0.000
|
— | — |
0.588
|
0.293
|
0.020
|
0.461
|
0.168
|
0.216
|
0.131
|
0.020
|
0.088
|
0.536
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
— | — | — |
HJA79362.1 endopeptidase La [Candidatus Desulfovibrio intestinavium]
|
WP_165780580
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0030163
|
GO:0005575_0.858|GO:0110165_0.846|GO:0005622_0.738|GO:0005737_0.738|GO:0016020_0.704|GO:0043226_0.625|GO:0008150_0.617|GO:0043229_0.614|GO:0043227_0.608|GO:0043231_0.597|GO:0003674_0.577
|
IPR008269+45-178+|IPR014721+32-180+|IPR020568+49-179+|IPR027065+45-161+
|
— |
PF05362+45-178+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— |
PTHR10046+45-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-180
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
20100.040
|
7.402
|
3.000
|
21.111
|
13.889
|
42.222
|
57.778
|
12.222
|
8.889
|
52.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
163.185
|
13.198
|
40.110
|
45.103
|
40.630
|
56.267
|
45.150
|
44.114
|
2.056
|
605.679
|
346.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.374
|
1.637
|
— | — |
0.483
|
— |
-0.459
|
— |
-8.243
|
4.555
|
— | — | — |
No JSON data available for plots.