Hg_chrom2_TN10mRNA_4142
Organism: Heterodera glycines Gene Locus: chr2:9795312-9796246 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 0.646 | 1.01 | 0.239 | 1.042 | 0.89 | 0.579 | 0.694 | 0.926 | 1.689 | 0.947 | 1.634 | 1.736 | 0.935 | 1.559 | 0.794 | 1.025 | 1.157 | 0.534 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3929
|
— | — |
1.667
|
1.000
|
3.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.821
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm|mitochondrion|endoplasmic_reticulum
|
— | — |
58-84
|
0.968
|
— | — | — | — |
0.003
|
— | — |
0.176
|
0.686
|
0.084
|
0.557
|
0.732
|
0.180
|
0.322
|
0.042
|
0.112
|
0.604
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
Hsc_gene_11323.t1;Hsc_gene_7019.t1
|
— | — |
PIO55992.1 phospholipase D domain protein, partial [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008444|GO:0032049
|
GO:0005575_0.891|GO:0110165_0.891|GO:0005622_0.838|GO:0016020_0.794|GO:0005737_0.782|GO:0043226_0.782|GO:0043229_0.765|GO:0043227_0.741|GO:0043231_0.738|GO:0005739_0.575|GO:0008150_0.541
|
IPR016270+14-119+
|
— | — | — |
PTHR12586+14-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-144
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
16224.870
|
9.624
|
4.000
|
27.083
|
9.722
|
45.139
|
54.861
|
15.278
|
11.806
|
47.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
7.433
|
2.749
|
7.782
|
9.791
|
7.972
|
6.263
|
17.115
|
5.779
|
1.382
|
9.938
|
6.271
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.272
|
1.694
|
— | — | — |
1.458
|
— |
1.706
|
— | — | — | — | — |
No JSON data available for plots.