Hg_chrom2_TN10mRNA_4143
Organism: Heterodera glycines Gene Locus: chr2:9797432-9799047 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.532 | 0.836 | 0.653 | 1.032 | 0.898 | 0.921 | 1.069 | 0.599 | 0.931 | 0.971 | 0.635 | 2.818 | 0.998 | 0.806 | 1.711 | 0.513 | 0.785 | 1.27 | 0.921 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3930
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
43-63
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.703
|
0.497
|
0.052
|
0.475
|
0.088
|
0.054
|
0.027
|
0.019
|
0.180
|
0.463
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
— | — | — |
HJA79362.1 endopeptidase La [Candidatus Desulfovibrio intestinavium]
|
MCL5117496
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0006508
|
GO:0008150_0.914|GO:0003674_0.875|GO:0005575_0.848|GO:0110165_0.842|GO:0009987_0.829|GO:0008152_0.785|GO:0005488_0.771|GO:0050896_0.765|GO:0003824_0.750|GO:0044238_0.750|GO:0016020_0.738|GO:0051716_0.728|GO:0005622_0.724|GO:0005737_0.724|GO:0005515_0.723|GO:0043170_0.722|GO:0042221_0.711|GO:0006950_0.710|GO:0019538_0.708|GO:0009056_0.701|GO:0071840_0.701|GO:0009628_0.699|GO:0036094_0.699|GO:0016043_0.697|GO:0043167_0.691|GO:0070887_0.688|GO:0016787_0.687|GO:0097159_0.686|GO:0033554_0.684|GO:0009057_0.682|GO:0006979_0.679|GO:0006996_0.679|GO:0006508_0.677|GO:0042802_0.677|GO:0034599_0.676|GO:0062197_0.676|GO:0030163_0.675|GO:0043226_0.675|GO:0070482_0.675|GO:0001666_0.673|GO:0007005_0.673|GO:0036293_0.673|GO:0003676_0.671|GO:0005739_0.670|GO:0019941_0.670|GO:0035694_0.670|GO:0043227_0.670|GO:0043229_0.670|GO:0043231_0.670|GO:0043632_0.670|GO:0051603_0.670|GO:0070407_0.670|GO:0140096_0.665|GO:0003723_0.664|GO:0008233_0.664|GO:0019899_0.663|GO:0043168_0.661|GO:1901363_0.660|GO:0000166_0.658|GO:1901265_0.658|GO:0003677_0.656|GO:0017076_0.656|GO:0030554_0.656|GO:0043565_0.656|GO:0016817_0.655|GO:0016462_0.654|GO:0016818_0.654|GO:0017111_0.654|GO:0097367_0.654|GO:0003727_0.650|GO:0004176_0.650|GO:0005524_0.650|GO:0016887_0.650|GO:0032553_0.650|GO:0032555_0.650|GO:0032559_0.650|GO:0035639_0.650|GO:0043531_0.650|GO:0051880_0.650|GO:0070182_0.650|GO:0140657_0.650|GO:0005829_0.619|GO:0005634_0.577|GO:0043228_0.573|GO:0043232_0.573|GO:0031974_0.564|GO:0043233_0.564|GO:0070013_0.563|GO:0031981_0.556|GO:0005654_0.550|GO:0005759_0.547|GO:0009295_0.540|GO:0042645_0.540
|
IPR008269+24-142+|IPR014721+7-151+|IPR020568+28-142+
|
— |
PF05362+24-142+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
18287.240
|
9.237
|
7.000
|
22.754
|
8.982
|
38.323
|
61.677
|
13.772
|
8.982
|
53.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
48.831
|
32.411
|
49.380
|
61.405
|
59.625
|
57.560
|
65.714
|
53.607
|
1.028
|
70.478
|
40.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.784
|
0.425
|
— | — | — | — |
0.436
|
-5.916
|
5.807
|
— | — | — |
No JSON data available for plots.