Hg_chrom2_TN10mRNA_4145
Organism: Heterodera glycines Gene Locus: chr2:9799123-9801185 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.057 | 1.136 | 0.588 | 0.473 | 1.166 | 1.015 | 1.989 | 0.631 | 1.229 | 0.689 | 1.671 | 2.052 | 1.093 | 1.16 | 0.649 | 1.211 | 0.861 | 0.437 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3931
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRAVQANQTVHVTRKQCR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.681
|
0.314
|
0.051
|
0.464
|
0.132
|
0.251
|
0.059
|
0.007
|
0.215
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000391
|
7.000
|
1.000
|
Hsc_gene_11323.t1
|
Hsc_gene_11323.t1
|
— |
Q8BHF7.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Mus musculus]
|
KAI6189933.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Aphelenchoides bicaudatus]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008444|GO:0032049
|
GO:0005575_0.857|GO:0110165_0.850|GO:0005622_0.771|GO:0016020_0.757|GO:0005737_0.752|GO:0043226_0.715|GO:0043229_0.704|GO:0043227_0.690|GO:0043231_0.680|GO:0005739_0.566
|
IPR016270+14-138+
|
— | — | — |
PTHR12586+14-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;166-176
|
1.000
|
9-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
19475.160
|
8.299
|
5.500
|
23.295
|
14.205
|
44.318
|
55.682
|
14.205
|
9.091
|
53.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
84.592
|
115.655
|
78.460
|
63.089
|
74.243
|
52.757
|
133.002
|
81.794
|
18.879
|
131.306
|
83.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.794
|
-1.012
|
— | — |
-0.479
|
1.344
|
0.523
|
0.846
|
— | — | — | — | — |
No JSON data available for plots.