Hg_chrom2_TN10mRNA_4147
Organism: Heterodera glycines Gene Locus: chr2:9802322-9805172 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 0.905 | 1.203 | 0.537 | 0.908 | 0.299 | 0.556 | 0.584 | 0.519 | 1.209 | 1.061 | 2.518 | 0.973 | 1.646 | 1.668 | 0.778 | 0.574 | 1.415 | 1.497 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3933
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKDDVEAEVRRKKKVY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.147
|
0.752
|
0.574
|
0.275
|
0.070
|
0.040
|
0.037
|
0.033
|
0.047
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
Hsc_gene_11324.t1
|
— |
Q9HD33.2 Large ribosomal subunit protein uL29m [Homo sapiens]
|
KHN79290.1 39S ribosomal protein L47, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0004176|GO:0004252|GO:0005761|GO:0006412|GO:0006508
|
GO:0005575_0.880|GO:0110165_0.880|GO:0005622_0.796|GO:0016020_0.789|GO:0043226_0.743|GO:0043229_0.731|GO:0005737_0.724|GO:0043227_0.695|GO:0043231_0.681|GO:0005739_0.558
|
IPR008269+135-232+|IPR010729+48-140_62-140+|IPR020568+137-232+|IPR038340+55-151+
|
— |
PF05362+135-232+Lon_protease_(S16)_C-terminal_proteolytic_domain|PF06984+62-140+Mitochondrial_39-S_ribosomal_protein_L47_(MRP-L47)
|
— |
PTHR21183+48-140+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
9uwh_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
28855.530
|
9.728
|
9.500
|
28.405
|
8.949
|
42.412
|
57.588
|
16.342
|
12.062
|
53.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
139.441
|
104.484
|
141.474
|
184.683
|
203.341
|
187.223
|
202.724
|
170.533
|
45.831
|
127.760
|
92.647
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.684
|
0.494
|
— | — | — | — |
0.393
|
— | — | — | — | — |
No JSON data available for plots.