Hg_chrom2_TN10mRNA_4148
Organism: Heterodera glycines Gene Locus: chr2:9806521-9809609 Feature type: polypeptideProtein Sequence
Length: 354
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.281 | 0.657 | 0.873 | 0.682 | 1.083 | 1.231 | 0.773 | 1.13 | 1.318 | 1.107 | 0.514 | 1.662 | 1.412 | 0.815 | 1.614 | 0.565 | 0.972 | 1.198 | 1.521 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3934
|
— | — |
1.444
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
58-84
|
0.968
|
— | — | — | — |
0.003
|
— | — |
0.318
|
0.475
|
0.093
|
0.441
|
0.364
|
0.234
|
0.128
|
0.067
|
0.134
|
0.510
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000390
|
7.000
|
1.000
|
Hsc_gene_7021.t1
|
Hsc_gene_11323.t1;Hsc_gene_7019.t1
|
— | — |
HJA79362.1 endopeptidase La [Candidatus Desulfovibrio intestinavium]
|
No
|
0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0006508|GO:0008444|GO:0032049
|
GO:0005575_0.851|GO:0110165_0.838|GO:0005622_0.731|GO:0005737_0.731|GO:0016020_0.705|GO:0043226_0.633|GO:0043229_0.618|GO:0043227_0.607|GO:0043231_0.596|GO:0008150_0.593|GO:0003674_0.563
|
IPR008269+191-352+|IPR014721+174-354+|IPR016270+14-87+|IPR020568+196-353+
|
— |
PF05362+191-352+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— |
PTHR12586+14-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-354
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
39717.710
|
7.382
|
4.000
|
24.859
|
11.299
|
42.373
|
57.627
|
13.559
|
11.299
|
49.153
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
4.643
|
4.527
|
6.713
|
6.498
|
8.772
|
4.977
|
16.036
|
5.265
|
0.691
|
0.000
|
0.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.698
|
— |
1.755
|
— | — | — | — | — |
No JSON data available for plots.