Hg_chrom2_TN10mRNA_4151
Organism: Heterodera glycines Gene Locus: chr2:9814811-9819082 Feature type: polypeptideProtein Sequence
Length: 304
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.918 | 1.435 | 0.0 | 1.645 | 0.759 | 0.274 | 0.822 | 0.146 | 1.245 | 1.096 | 2.322 | 1.005 | 1.202 | 1.947 | 0.799 | 0.647 | 1.246 | 1.265 | 1.161 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3937
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKKDDVEAEVRRKKKVY
|
20-40
|
0.999
|
14-42
|
0.999
|
— | — |
0.000
|
— | — |
0.066
|
0.912
|
0.075
|
0.220
|
0.020
|
0.034
|
0.098
|
0.004
|
0.026
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001874
|
3.000
|
1.000
|
Hsc_gene_11324.t1
|
— | — |
Q9HD33.2 Large ribosomal subunit protein uL29m [Homo sapiens]
|
KAI1727440.1 mitochondrial 39-S ribosomal protein l47 (MRP-L47) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005761|GO:0006412
|
GO:0005575_0.903|GO:0110165_0.898|GO:0005622_0.856|GO:0016020_0.820|GO:0043226_0.804|GO:0043229_0.791|GO:0005737_0.760|GO:0043227_0.740|GO:0043231_0.715|GO:0005739_0.561
|
IPR010729+35-238_77-167+|IPR038340+70-176+
|
— |
PF06984+77-167+Mitochondrial_39-S_ribosomal_protein_L47_(MRP-L47)
|
— |
PTHR21183+35-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
277-304
|
1.000
|
1-276
|
7qh7_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
35739.510
|
6.382
|
-0.500
|
36.184
|
10.855
|
52.632
|
47.368
|
18.421
|
17.763
|
45.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
653.828
|
385.553
|
445.195
|
552.568
|
535.794
|
502.707
|
444.450
|
374.257
|
779.598
|
1060.604
|
940.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.382
|
0.422
|
— | — | — |
-0.532
|
0.392
|
— | — | — | — | — |
No JSON data available for plots.