Hg_chrom2_TN10mRNA_4153
Organism: Heterodera glycines Gene Locus: chr2:9819566-9821843 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.146 | 0.764 | 1.195 | 0.324 | 1.565 | 2.046 | 0.782 | 1.408 | 0.626 | 1.079 | 0.782 | 3.038 | 0.0 | 0.813 | 1.341 | 1.207 | 0.539 | 0.925 | 0.361 | 0.69 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3938
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
MKREGRRRD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.771
|
0.094
|
0.020
|
0.468
|
0.110
|
0.148
|
0.204
|
0.030
|
0.097
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001159
|
4.000
|
1.000
|
Hsc_gene_11325.t1
|
Hsc_gene_11325.t1
|
— | — |
KAF7637762.1 Mediator of RNA polymerase II transcription subunit 11 [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0006357|GO:0016592
|
— |
IPR019404+50-165_53-143+
|
— |
PF10280+53-143+Mediator_complex_protein
|
— |
PTHR22890+50-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;128-213
|
1.000
|
57-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
23591.360
|
5.016
|
-6.000
|
30.516
|
5.634
|
53.521
|
46.479
|
14.554
|
15.962
|
49.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
213.000
|
248.512
|
169.481
|
138.982
|
125.163
|
112.169
|
144.746
|
110.767
|
492.627
|
168.720
|
307.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.785
|
-0.976
|
— | — | — |
0.377
|
— |
0.528
|
— | — | — | — | — |
No JSON data available for plots.