Hg_chrom2_TN10mRNA_4159
Organism: Heterodera glycines Gene Locus: chr2:9848273-9851604 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.434 | 0.82 | 0.561 | 0.456 | 1.322 | 1.468 | 1.049 | 1.101 | 0.783 | 1.429 | 1.268 | 1.814 | 1.468 | 0.508 | 1.528 | 0.818 | 0.506 | 0.734 | 0.339 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3944
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRDRVVSLTKVKKKSRE,KKKSREGKENILKRGQR,TKVKKKSREGKENILKRG
|
56-76
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.634
|
0.125
|
0.013
|
0.407
|
0.117
|
0.063
|
0.036
|
0.002
|
0.044
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000726
|
4.000
|
2.000
|
Hsc_gene_11327.t1;Hsc_gene_18423.t1
|
Hsc_gene_9499.t2
|
— |
Q9D0I8.1 mRNA turnover protein 4 homolog [Mus musculus]
|
KAH7727904.1 ribosomal protein L10 domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.771|GO:0110165_0.763|GO:0005622_0.681|GO:0043226_0.610|GO:0008150_0.608|GO:0003674_0.586|GO:0043229_0.584|GO:0016020_0.568|GO:0005488_0.538
|
IPR001790+66-120+|IPR040637+126-198+|IPR043141+65-217_66-142+|IPR043164+125-201+|IPR051742+1-222+
|
— |
PF00466+66-120+Ribosomal_protein_L10|PF17777+126-198+Insertion_domain_in_60S_ribosomal_protein_L10P
|
G3DSA:3.90.105.20:FF:000003+125-201+Ribosome_assembly_factor_mrt4
|
PTHR45841+1-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;225-227
|
1.000
|
27-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
24947.800
|
10.550
|
13.500
|
29.075
|
7.930
|
47.137
|
52.863
|
18.062
|
11.013
|
45.374
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
277.456
|
202.888
|
144.927
|
377.850
|
374.071
|
226.643
|
263.616
|
128.971
|
34.940
|
543.053
|
325.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.716
|
0.760
|
1.493
|
— |
-0.707
|
— |
-0.917
|
1.172
|
-4.082
|
— | — | — | — |
No JSON data available for plots.