Hg_chrom2_TN10mRNA_4161
Organism: Heterodera glycines Gene Locus: chr2:9872849-9874221 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.325 | 0.482 | 1.225 | 0.357 | 1.641 | 0.93 | 1.11 | 0.259 | 0.921 | 1.12 | 0.942 | 1.219 | 1.151 | 0.598 | 1.48 | 1.406 | 0.68 | 0.864 | 0.0 | 0.152 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3946
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.391
|
0.237
|
0.060
|
0.651
|
0.380
|
0.144
|
0.229
|
0.019
|
0.258
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007253
|
1.000
|
1.000
|
Hsc_gene_4506.t1
|
Hsc_gene_4506.t1
|
— |
P53441.1 Caltractin [Naegleria gruberi]
|
KAH7696585.1 centrin-1-like protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.781|GO:0110165_0.777|GO:0005622_0.732|GO:0043226_0.622|GO:0008150_0.616|GO:0005737_0.604|GO:0043229_0.603|GO:0016020_0.588|GO:0003674_0.582|GO:0005488_0.548
|
IPR002048+118-153_122-150_122-188_123-188+|IPR011992+42-191+|IPR050230+42-169+
|
SM00054+122-150+
|
PF13499+123-188+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000001+33-190+Calmodulin_1
|
PTHR23048+42-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
20697.160
|
4.763
|
-5.500
|
30.570
|
5.181
|
50.259
|
49.741
|
13.990
|
16.580
|
53.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
448.634
|
831.582
|
302.211
|
357.842
|
407.190
|
246.601
|
401.737
|
220.665
|
222.556
|
757.923
|
528.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.693
|
-1.354
|
0.355
|
— |
-0.709
|
0.715
|
— |
1.009
|
— | — | — | — | — |
No JSON data available for plots.