Hg_chrom2_TN10mRNA_4164
Organism: Heterodera glycines Gene Locus: chr2:9888462-9893276 Feature type: polypeptideProtein Sequence
Length: 345
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.348 | 0.949 | 0.8 | 1.111 | 1.263 | 0.863 | 1.014 | 1.224 | 1.332 | 0.483 | 1.194 | 1.61 | 0.892 | 1.065 | 1.077 | 0.76 | 0.703 | 0.892 | 1.108 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3949
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.998
|
1.000
|
0.000
|
0.000
|
0.118
|
0.318
|
0.082
|
0.339
|
0.336
|
0.260
|
0.231
|
0.024
|
0.227
|
0.887
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007255
|
1.000
|
1.000
|
Hsc_gene_4501.t1
|
Hsc_gene_4501.t1
|
— |
Q20390.2 Palmitoyl-protein thioesterase 1 [Caenorhabditis elegans]
|
KAI1728685.1 palmitoyl protein thioesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0098599
|
GO:0008150_0.896|GO:0005575_0.803|GO:0110165_0.803|GO:0016020_0.729|GO:0005622_0.702|GO:0009987_0.696|GO:0003674_0.683|GO:0043226_0.662|GO:0005737_0.648|GO:0043229_0.642|GO:0043227_0.635|GO:0043231_0.619|GO:0008152_0.601|GO:0043170_0.580|GO:0003824_0.553|GO:0005773_0.541|GO:0043412_0.536|GO:0016787_0.529|GO:0098732_0.505|GO:0098734_0.505
|
IPR002472+21-43_61-80_101-117_145-164_179-198_231-249_276-294+|IPR029058+18-312_25-299+
|
— |
PF02089+29-283+Palmitoyl_protein_thioesterase
|
G3DSA:3.40.50.1820:FF:000107+18-302+Palmitoyl-protein_thioesterase_1
|
PTHR11247+10-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
300-345
|
1.000
|
1-299
|
3gro_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
38618.550
|
4.867
|
-8.500
|
22.319
|
12.754
|
45.217
|
54.783
|
10.435
|
11.884
|
49.855
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1849.904
|
39.310
|
903.587
|
551.523
|
1191.242
|
1050.567
|
4064.373
|
1054.107
|
624.739
|
4304.258
|
2727.321
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.293
|
3.671
|
-0.605
|
1.080
|
— |
1.962
|
— |
2.089
|
— | — | — | — | — |