Hg_chrom2_TN10mRNA_4165
Organism: Heterodera glycines Gene Locus: chr2:9894739-9896915 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.773 | 0.619 | 0.629 | 0.734 | 0.266 | 1.364 | 2.216 | 1.197 | 0.355 | 0.647 | 0.484 | 1.252 | 0.369 | 4.501 | 1.248 | 0.836 | 0.523 | 0.685 | 0.205 | 0.235 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRRR,RRRK,KGPPGEPGKVINGAPPGPPGPPGAPGPQGPPGPPGRDGQPGRPGPPGPP
|
52-72
|
1.000
|
6-66
|
0.994
|
— | — |
0.000
|
— | — |
0.064
|
0.059
|
0.015
|
0.099
|
0.396
|
0.251
|
0.333
|
0.007
|
0.695
|
0.240
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007256
|
1.000
|
1.000
|
Hsc_gene_4500.t1
|
Hsc_gene_4500.t1
|
— |
P18831.2 Cuticle collagen 6 [Caenorhabditis elegans]
|
KAI1728771.1 collagen triple helix repeat (20 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.941|GO:0032501_0.886|GO:0032502_0.862|GO:0048856_0.862|GO:0007275_0.844|GO:0005575_0.682|GO:0110165_0.680|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.537
|
IPR002486+59-111_62-111+|IPR008160+230-286+|IPR050632+64-367+
|
SM01088+59-111+
|
PF01391+230-286+Collagen_triple_helix_repeat_(20_copies)|PF01484+62-111+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+64-367+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;107-376
|
1.000
|
55-106
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
37490.390
|
10.583
|
20.500
|
16.755
|
4.787
|
33.777
|
66.223
|
11.702
|
5.053
|
70.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
562.296
|
538.497
|
7.939
|
73.751
|
1928.769
|
1802.954
|
190.027
|
347.639
|
23.496
|
608.831
|
357.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-6.325
|
-3.005
|
3.334
|
4.677
|
— |
-3.239
|
-2.487
|
-0.730
|
-4.848
|
— | — | — | — |
No JSON data available for plots.