Hg_chrom2_TN10mRNA_4168
Organism: Heterodera glycines Gene Locus: chr2:9912162-9916835 Feature type: polypeptideProtein Sequence
Length: 993
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.358 | 0.915 | 0.66 | 0.923 | 0.981 | 0.863 | 1.108 | 1.186 | 1.021 | 0.915 | 1.185 | 1.259 | 1.143 | 1.171 | 0.82 | 1.09 | 1.205 | 0.465 | 1.096 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3953
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.556
|
0.151
|
0.014
|
0.595
|
0.185
|
0.191
|
0.069
|
0.001
|
0.168
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000539
|
5.000
|
2.000
|
Hsc_gene_18728.t1;Hsc_gene_4935.t1
|
Hsc_gene_18269.t1;Hsc_gene_18728.t1;Hsc_gene_18728.t2;Hsc_gene_4935.t1
|
— |
O62275.1 Argonaute protein wago-4 [Caenorhabditis elegans]
|
AAK94490.1 PAZ/Piwi domain protein [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0005515
|
GO:0008150_0.900|GO:0005575_0.799|GO:0110165_0.795|GO:0009987_0.720|GO:0005622_0.710|GO:0065007_0.677|GO:0008152_0.663|GO:0050789_0.660|GO:0003674_0.658|GO:0050794_0.618|GO:0043226_0.617|GO:0043229_0.617|GO:0043170_0.615|GO:0016020_0.602|GO:0044237_0.591|GO:0009058_0.586|GO:0044249_0.558|GO:0005488_0.550|GO:0005737_0.549|GO:0009059_0.541|GO:0019222_0.528|GO:0010467_0.527|GO:0031323_0.526|GO:0060255_0.517|GO:0009889_0.511|GO:0031326_0.510|GO:0010468_0.507|GO:0010556_0.507
|
IPR003100+274-420_282-397_305-410+|IPR003165+570-942_732-941_754-942+|IPR012337+563-940+|IPR036085+268-423+|IPR036397+717-974+
|
SM00949+274-420+|SM00950+570-942+
|
PF02170+305-410+PAZ_domain|PF02171+732-941+Piwi_domain
|
— |
PTHR22891+27-946+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
673-721
|
2.000
|
1-672;722-993
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
110742.270
|
8.541
|
23.000
|
24.572
|
11.078
|
46.626
|
53.374
|
13.998
|
10.574
|
52.870
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
2574.507
|
136.446
|
303.403
|
1650.409
|
9078.381
|
2322.320
|
1932.241
|
439.394
|
194.152
|
5169.380
|
3037.139
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
3.460
|
2.554
|
2.428
|
-1.953
|
-0.254
|
-2.508
|
2.280
|
-4.860
|
— | — | — | — |
No JSON data available for plots.