Hg_chrom2_TN10mRNA_4171
Organism: Heterodera glycines Gene Locus: chr2:9952162-9955472 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.224 | 1.02 | 0.997 | 0.151 | 1.06 | 1.125 | 0.966 | 1.754 | 0.682 | 1.096 | 0.764 | 1.419 | 1.096 | 1.898 | 0.985 | 0.971 | 0.827 | 0.698 | 0.506 | 0.709 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3956
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.213
|
0.155
|
0.037
|
0.529
|
0.159
|
0.472
|
0.383
|
0.031
|
0.337
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007258
|
1.000
|
1.000
|
Hsc_gene_4494.t1
|
— | — |
Q3ZBV1.1 IST1 homolog [Bos taurus]
|
KAI1727892.1 regulator of vps4 activity in the MVB pathway domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015031
|
GO:0008150_0.885|GO:0009987_0.831|GO:0005575_0.721|GO:0110165_0.720|GO:0065007_0.670|GO:0005622_0.667|GO:0050789_0.664|GO:0016020_0.637|GO:0043226_0.608|GO:0032502_0.605|GO:0048856_0.605|GO:0032501_0.603|GO:0003674_0.595|GO:0071840_0.595|GO:0048518_0.591|GO:0016043_0.590|GO:0043229_0.585|GO:0007275_0.577|GO:0005737_0.567|GO:0043227_0.554|GO:0005488_0.548|GO:0071944_0.548|GO:0043231_0.531|GO:0005886_0.519
|
IPR005061+10-195_13-180+|IPR042277+3-193+
|
— |
PF03398+13-180+Regulator_of_Vps4_activity_in_the_MVB_pathway
|
G3DSA:1.20.1260.60:FF:000002+4-189+Vacuolar_protein_sorting-associated_protein_IST1
|
PTHR12161+10-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-456
|
1.000
|
1-184
|
8v2s_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
49485.520
|
6.405
|
-1.000
|
25.219
|
10.526
|
45.833
|
54.167
|
13.377
|
11.842
|
55.263
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1772.545
|
3939.200
|
1326.783
|
1535.761
|
1814.259
|
1961.550
|
2269.937
|
3541.224
|
895.339
|
937.613
|
919.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.798
|
-1.496
|
0.319
|
0.208
|
— |
0.221
|
0.760
|
— | — | — | — | — | — |
No JSON data available for plots.