Hg_chrom2_TN10mRNA_4172
Organism: Heterodera glycines Gene Locus: chr2:9955975-9963220 Feature type: polypeptideProtein Sequence
Length: 827
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.012 | 0.9 | 1.143 | 0.709 | 2.056 | 2.232 | 0.533 | 0.846 | 0.618 | 1.405 | 1.594 | 0.925 | 0.638 | 0.581 | 1.505 | 0.553 | 0.852 | 0.421 | 0.372 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3957
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRERTKADEEIGKLKKE,KKCEQLAQCTQCEQYKKER,KKANAHFDDDLKEFKRRRL,KRRRLAMDDELKQFKRREK,RRRLAMDDELKQFKRREKD,KRDRTKTDEDIIRLKRERT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.700
|
0.114
|
0.003
|
0.472
|
0.033
|
0.065
|
0.054
|
0.014
|
0.121
|
0.163
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001876
|
2.000
|
2.000
|
Hsc_gene_4493.t1;Hsc_gene_4493.t2
|
Hsc_gene_4493.t1
|
— | — | — |
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;55-116;448-827
|
2.000
|
19-54;117-447
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
95174.010
|
6.630
|
1.000
|
38.210
|
6.046
|
59.855
|
40.145
|
19.589
|
18.622
|
40.266
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2329.686
|
4078.538
|
2018.749
|
1536.181
|
2296.964
|
2463.347
|
2836.528
|
2041.300
|
2794.864
|
1619.377
|
2123.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.244
|
-1.546
|
-0.286
|
0.549
|
— |
0.214
|
— |
0.616
|
— | — | — | — | — |
No JSON data available for plots.