Hg_chrom2_TN10mRNA_4174
Organism: Heterodera glycines Gene Locus: chr2:9963408-9967898 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.327 | 0.489 | 1.201 | 0.414 | 1.351 | 2.002 | 0.393 | 1.502 | 0.934 | 1.38 | 1.274 | 1.59 | 1.084 | 0.347 | 0.919 | 0.772 | 0.738 | 1.047 | 0.231 | 1.06 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.562
|
0.142
|
0.099
|
0.510
|
0.169
|
0.236
|
0.179
|
0.003
|
0.076
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007259
|
1.000
|
1.000
|
Hsc_gene_4492.t1
|
Hsc_gene_4492.t1
|
— |
Q20938.2 Probable 26S proteasome regulatory subunit rpn-6.1 [Caenorhabditis elegans]
|
KAF7638817.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.836|GO:0008150_0.829|GO:0110165_0.821|GO:0005622_0.802|GO:0043226_0.639|GO:0008152_0.626|GO:0043229_0.622|GO:0032991_0.616|GO:0044238_0.604|GO:0016020_0.597|GO:0005737_0.576|GO:0043170_0.564|GO:0019538_0.545|GO:0043227_0.530|GO:0009056_0.526|GO:1902494_0.515|GO:0009057_0.506
|
IPR000717+133-302_218-288_231-313+|IPR036390+225-305+|IPR040780+302-328+|IPR050871+16-328+
|
SM00088+231-313+|SM00753+52-230+
|
PF01399+218-288+PCI_domain|PF18503+302-328+26S_proteasome_subunit_RPN6_C-terminal_helix_domain
|
— |
PTHR10678+16-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
3txn_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
37827.170
|
6.348
|
-1.000
|
30.631
|
10.811
|
50.450
|
49.550
|
15.916
|
14.715
|
43.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2364.731
|
1433.614
|
1614.387
|
3348.205
|
3913.427
|
3078.715
|
3145.560
|
2096.460
|
1385.493
|
2320.188
|
1919.604
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.087
|
1.161
|
0.193
|
-0.331
|
— |
-0.658
|
0.728
|
— | — | — | — | — |
No JSON data available for plots.