Hg_chrom2_TN10mRNA_4182
Organism: Heterodera glycines Gene Locus: chr2:10076265-10080625 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.937 | 1.151 | 0.843 | 1.079 | 1.217 | 0.788 | 0.791 | 1.183 | 1.381 | 0.937 | 1.354 | 1.479 | 0.747 | 1.292 | 1.069 | 0.613 | 1.046 | 0.885 | 0.508 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3966
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSK,GEKSVKRKKAQKRSN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.153
|
0.028
|
0.579
|
0.206
|
0.221
|
0.119
|
0.100
|
0.115
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001870
|
3.000
|
1.000
|
Hsc_gene_4529.t1
|
Hsc_gene_4529.t1
|
— |
Q91YR5.1 eEF1A lysine and N-terminal methyltransferase [Mus musculus]
|
KAF7638540.1 Methyltransf_11 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.857|GO:0110165_0.857|GO:0005622_0.767|GO:0005737_0.704|GO:0003674_0.607|GO:0016020_0.561|GO:0008150_0.530|GO:0043226_0.509|GO:0043229_0.501
|
IPR025714+48-170+|IPR029063+9-221_12-172_388-666_462-631+|IPR051419+5-237+
|
— |
PF01564+489-610+Spermine/spermidine_synthase_domain|PF13847+48-170+Methyltransferase_domain
|
— |
PTHR12176+5-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
77890.270
|
6.993
|
3.500
|
26.906
|
9.784
|
46.906
|
53.094
|
14.101
|
12.806
|
48.633
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
355.984
|
597.627
|
428.230
|
468.966
|
387.548
|
383.552
|
278.242
|
344.812
|
34.563
|
448.140
|
270.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.711
|
-0.487
|
0.240
|
-0.307
|
— |
-0.454
|
— | — |
-3.831
|
3.970
|
— | — | — |
No JSON data available for plots.