Hg_chrom2_TN10mRNA_4183
Organism: Heterodera glycines Gene Locus: chr2:10082462-10084224 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.276 | 1.418 | 0.739 | 0.14 | 1.491 | 0.834 | 0.532 | 1.22 | 1.084 | 1.318 | 1.17 | 0.717 | 1.129 | 0.391 | 1.327 | 0.755 | 0.933 | 1.293 | 0.938 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3967
|
— | — |
1.667
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.791
|
0.169
|
0.005
|
0.503
|
0.112
|
0.080
|
0.112
|
0.004
|
0.037
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000388
|
6.000
|
2.000
|
Hsc_gene_4528.t1;Hsc_gene_8874.t1
|
Hsc_gene_4528.t1
|
— |
Q04908.1 26S proteasome non-ATPase regulatory subunit 3 [Caenorhabditis elegans]
|
KAF7637239.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.818|GO:0110165_0.812|GO:0005622_0.749|GO:0008150_0.667|GO:0016020_0.605|GO:0032991_0.568|GO:0043226_0.568|GO:0043229_0.556|GO:0005737_0.541|GO:0043227_0.521|GO:0043231_0.504
|
IPR000717+181-244+|IPR050756+23-243+
|
SM00753+16-192+
|
PF01399+181-244+PCI_domain
|
— |
PTHR10758+23-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;234-246
|
1.000
|
15-233
|
5vhs_V
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
27744.670
|
9.219
|
6.000
|
29.675
|
10.163
|
50.000
|
50.000
|
16.667
|
13.008
|
47.561
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
78.003
|
107.527
|
75.966
|
87.745
|
85.518
|
79.757
|
125.357
|
201.728
|
29.013
|
33.156
|
31.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.729
|
-0.431
|
0.316
|
— | — |
0.664
|
1.238
|
-0.545
|
— | — | — | — | — |
No JSON data available for plots.