Hg_chrom2_TN10mRNA_4184
Organism: Heterodera glycines Gene Locus: chr2:10086254-10087422 Feature type: polypeptideProtein Sequence
Length: 250
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.744 | 1.164 | 1.103 | 1.333 | 0.821 | 0.762 | 0.2 | 0.978 | 1.622 | 1.333 | 1.647 | 1.111 | 0.846 | 0.816 | 1.143 | 0.525 | 1.152 | 0.308 | 0.353 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3968
|
— | — |
1.556
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
nucleus
|
GEKSVKRKKAQKRSN
|
— | — | — | — |
1-20
|
— |
0.742
|
— |
0.000
|
0.550
|
0.152
|
0.114
|
0.626
|
0.145
|
0.109
|
0.185
|
0.234
|
0.054
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001870
|
3.000
|
1.000
|
Hsc_gene_4529.t1
|
Hsc_gene_4529.t1
|
— |
Q7NQK7.1 Polyamine aminopropyltransferase [Chromobacterium violaceum ATCC 12472]
|
KAF7638540.1 Methyltransf_11 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.928|GO:0110165_0.928|GO:0005622_0.847|GO:0005737_0.790|GO:0008150_0.594|GO:0016020_0.566|GO:0009987_0.543|GO:0043226_0.536|GO:0043229_0.524|GO:0003674_0.507
|
IPR029063+1-225_20-186+
|
— |
PF01564+44-166+Spermine/spermidine_synthase_domain
|
— |
PTHR43317+23-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
27336.660
|
5.061
|
-3.500
|
27.600
|
6.000
|
45.200
|
54.800
|
13.200
|
14.400
|
50.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
130.919
|
308.473
|
159.671
|
217.165
|
170.874
|
142.550
|
86.832
|
167.381
|
27.473
|
82.309
|
58.808
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.181
|
-0.644
|
0.553
|
-0.378
|
— |
-0.703
|
— |
-0.803
|
— |
3.187
|
— | — | — |