Hg_chrom2_TN10mRNA_4185
Organism: Heterodera glycines Gene Locus: chr2:10087660-10092697 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.618 | 1.505 | 1.177 | 0.446 | 1.564 | 0.747 | 0.732 | 1.133 | 0.791 | 1.312 | 0.883 | 0.571 | 1.079 | 0.436 | 1.189 | 0.555 | 0.637 | 0.883 | 1.992 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3969
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.882
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.593
|
0.388
|
0.037
|
0.403
|
0.050
|
0.064
|
0.054
|
0.023
|
0.097
|
0.443
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000388
|
6.000
|
2.000
|
Hsc_gene_4528.t1;Hsc_gene_8874.t1
|
Hsc_gene_4528.t1;Hsc_gene_8874.t1
|
— |
P25161.1 Probable 26S proteasome non-ATPase regulatory subunit 3 [Drosophila melanogaster]
|
KAF7637239.1 PCI domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0005575_0.782|GO:0110165_0.776|GO:0005622_0.699|GO:0008150_0.665|GO:0032991_0.538|GO:0016020_0.529
|
IPR037219+174-274+|IPR050756+23-164+
|
SM00753+16-206+
|
— | — |
PTHR10758+23-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-309
|
6epf_S
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
34610.740
|
4.873
|
-9.500
|
29.773
|
11.650
|
46.926
|
53.074
|
13.916
|
15.858
|
50.162
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgreen
|
2607.548
|
260.786
|
284.790
|
277.106
|
233.970
|
220.590
|
161.111
|
345.163
|
13830.851
|
366.067
|
6136.689
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.277
|
— |
-0.444
|
0.545
|
-0.959
|
5.147
|
-5.488
|
— | — | — |
No JSON data available for plots.