Hg_chrom2_TN10mRNA_4190
Organism: Heterodera glycines Gene Locus: chr2:10252743-10257858 Feature type: polypeptideProtein Sequence
Length: 759
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.072 | 0.886 | 0.909 | 0.747 | 1.419 | 0.392 | 1.976 | 1.025 | 1.335 | 0.998 | 1.628 | 1.281 | 0.988 | 1.586 | 1.167 | 0.972 | 0.798 | 1.318 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3974
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQTCRTCCRLRRTKQ,RREQNTILSIPGKIFKK,KKHLSHHVMCDLPTRRMSR
|
9-29
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.452
|
0.182
|
0.119
|
0.448
|
0.173
|
0.079
|
0.097
|
0.070
|
0.161
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000001
|
1.000
|
199.000
|
Hsc_gene_10050.t1;Hsc_gene_10051.t1;Hsc_gene_10052.t1;Hsc_gene_10880.t1;Hsc_gene_10881.t1;Hsc_gene_10882.t1;Hsc_gene_10883.t1;Hsc_gene_10990.t1;Hsc_gene_11173.t1;Hsc_gene_11174.t1;Hsc_gene_11175.t1;Hsc_gene_11396.t1;Hsc_gene_11397.t1;Hsc_gene_11405.t1;Hsc_gene_11406.t1;Hsc_gene_11407.t1;Hsc_gene_11410.t1;Hsc_gene_11411.t1;Hsc_gene_11412.t1;Hsc_gene_11520.t1;Hsc_gene_11521.t1;Hsc_gene_11561.t1;Hsc_gene_11628.t1;Hsc_gene_11682.t1;Hsc_gene_11756.t1;Hsc_gene_11757.t1;Hsc_gene_11848.t1;Hsc_gene_11848.t2;Hsc_gene_11879.t1;Hsc_gene_11880.t1;Hsc_gene_11899.t1;Hsc_gene_12169.t1;Hsc_gene_12170.t1;Hsc_gene_12297.t1;Hsc_gene_12613.t1;Hsc_gene_12614.t1;Hsc_gene_12863.t1;Hsc_gene_12864.t1;Hsc_gene_13571.t1;Hsc_gene_13585.t1;Hsc_gene_13586.t1;Hsc_gene_1387.t1;Hsc_gene_1388.t1;Hsc_gene_1389.t1;Hsc_gene_1390.t1;Hsc_gene_1391.t1;Hsc_gene_14057.t1;Hsc_gene_14059.t1;Hsc_gene_14109.t1;Hsc_gene_14143.t1;Hsc_gene_14147.t1;Hsc_gene_14148.t1;Hsc_gene_1419.t1;Hsc_gene_1420.t1;Hsc_gene_1421.t1;Hsc_gene_1422.t1;Hsc_gene_14623.t1;Hsc_gene_14624.t1;Hsc_gene_14832.t1;Hsc_gene_14833.t1;Hsc_gene_15263.t1;Hsc_gene_15264.t1;Hsc_gene_15290.t1;Hsc_gene_15648.t1;Hsc_gene_15652.t1;Hsc_gene_16004.t1;Hsc_gene_16005.t1;Hsc_gene_16053.t1;Hsc_gene_16314.t1;Hsc_gene_16315.t1;Hsc_gene_1640.t1;Hsc_gene_1640.t2;Hsc_gene_16912.t1;Hsc_gene_16913.t1;Hsc_gene_16917.t1;Hsc_gene_17137.t1;Hsc_gene_17327.t1;Hsc_gene_17328.t1;Hsc_gene_17510.t1;Hsc_gene_17618.t1;Hsc_gene_17619.t1;Hsc_gene_18393.t1;Hsc_gene_19205.t1;Hsc_gene_19206.t1;Hsc_gene_19331.t1;Hsc_gene_19575.t1;Hsc_gene_19576.t1;Hsc_gene_19774.t1;Hsc_gene_20590.t1;Hsc_gene_20604.t1;Hsc_gene_20617.t1;Hsc_gene_20625.t1;Hsc_gene_20665.t1;Hsc_gene_20666.t1;Hsc_gene_20694.t1;Hsc_gene_21138.t1;Hsc_gene_21139.t1;Hsc_gene_21140.t1;Hsc_gene_21141.t1;Hsc_gene_21733.t1;Hsc_gene_21838.t1;Hsc_gene_21985.t1;Hsc_gene_21986.t1;Hsc_gene_22702.t1;Hsc_gene_22742.t1;Hsc_gene_22954.t1;Hsc_gene_23368.t1;Hsc_gene_23369.t1;Hsc_gene_23913.t1;Hsc_gene_24282.t1;Hsc_gene_24283.t1;Hsc_gene_24284.t1;Hsc_gene_24299.t1;Hsc_gene_24299.t2;Hsc_gene_24502.t1;Hsc_gene_24503.t1;Hsc_gene_24504.t1;Hsc_gene_24505.t1;Hsc_gene_24555.t1;Hsc_gene_24556.t1;Hsc_gene_24673.t1;Hsc_gene_24865.t1;Hsc_gene_25113.t1;Hsc_gene_25573.t1;Hsc_gene_25674.t1;Hsc_gene_25676.t1;Hsc_gene_25680.t1;Hsc_gene_25755.t1;Hsc_gene_25756.t1;Hsc_gene_25775.t1;Hsc_gene_25865.t1;Hsc_gene_25866.t1;Hsc_gene_25868.t1;Hsc_gene_25879.t1;Hsc_gene_25880.t1;Hsc_gene_25903.t1;Hsc_gene_26382.t1;Hsc_gene_26462.t1;Hsc_gene_26464.t1;Hsc_gene_26471.t1;Hsc_gene_26473.t1;Hsc_gene_26605.t1;Hsc_gene_26612.t1;Hsc_gene_26614.t1;Hsc_gene_26616.t1;Hsc_gene_26617.t1;Hsc_gene_26618.t1;Hsc_gene_26633.t1;Hsc_gene_2876.t1;Hsc_gene_3203.t1;Hsc_gene_3259.t1;Hsc_gene_3375.t1;Hsc_gene_3515.t1;Hsc_gene_3515.t2;Hsc_gene_3625.t1;Hsc_gene_3626.t1;Hsc_gene_3627.t1;Hsc_gene_3982.t1;Hsc_gene_3983.t1;Hsc_gene_4172.t1;Hsc_gene_4173.t1;Hsc_gene_4648.t1;Hsc_gene_5095.t1;Hsc_gene_5163.t1;Hsc_gene_5226.t1;Hsc_gene_523.t1;Hsc_gene_5503.t1;Hsc_gene_5618.t1;Hsc_gene_5619.t1;Hsc_gene_5681.t1;Hsc_gene_5686.t1;Hsc_gene_5687.t1;Hsc_gene_5688.t1;Hsc_gene_5689.t1;Hsc_gene_6032.t1;Hsc_gene_6033.t1;Hsc_gene_6851.t1;Hsc_gene_6852.t1;Hsc_gene_6997.t1;Hsc_gene_7120.t1;Hsc_gene_7121.t1;Hsc_gene_7135.t1;Hsc_gene_7657.t1;Hsc_gene_7805.t1;Hsc_gene_7807.t1;Hsc_gene_7808.t1;Hsc_gene_7809.t1;Hsc_gene_7844.t1;Hsc_gene_7845.t1;Hsc_gene_8091.t1;Hsc_gene_8092.t1;Hsc_gene_812.t1;Hsc_gene_8200.t1;Hsc_gene_8487.t1;Hsc_gene_8875.t1;Hsc_gene_9372.t1;Hsc_gene_9373.t1;Hsc_gene_9594.t1;Hsc_gene_9663.t1
|
— | — |
P04323.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Drosophila melanogaster]
|
KAH7722263.1 Gag-Pol polyprotein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.925|GO:0005622_0.858|GO:0005737_0.747
|
IPR041577+235-329+|IPR041588+433-484+|IPR043128+208-276+|IPR043502+63-332+|IPR050951+64-168+
|
— |
PF17919+235-329+RNase_H-like_domain_found_in_reverse_transcriptase|PF17921+433-484+Integrase_zinc_binding_domain
|
G3DSA:1.10.340.70:FF:000003+399-485+Protein_CBG25708
|
PTHR37984+64-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
575-704
|
2.000
|
1-574;705-759
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
87256.430
|
10.214
|
53.000
|
27.668
|
11.858
|
51.910
|
48.090
|
18.314
|
9.354
|
46.509
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
162.422
|
58.839
|
221.660
|
83.856
|
54.059
|
100.008
|
71.300
|
498.846
|
77.959
|
243.912
|
172.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.683
|
0.374
|
-1.292
|
-0.663
|
0.900
|
-0.479
|
2.216
|
-2.666
|
— | — | — | — | — |
No JSON data available for plots.